Basic Information
Locus ID:
Lb1G01303
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 198825208 | 198834490 | + | Lb1G01303 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.01 | 98,199.01 Da | 49.30 | 71.71 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16464 | RING-H2_Pirh2 | 758 | 801 | 3.89496E-15 | - |
| CDD | cd12108 | Hr-like | 323 | 462 | 9.8317E-30 | - |
| CDD | cd16464 | RING-H2_Pirh2 | 758 | 801 | 3.89496E-15 | - |
| CDD | cd12108 | Hr-like | 323 | 462 | 9.8317E-30 | - |
| Pfam | PF14599 | Zinc-ribbon | 806 | 863 | 7.6E-22 | IPR039512 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 319 | 463 | 2.0E-7 | IPR012312 |
| Pfam | PF14599 | Zinc-ribbon | 806 | 863 | 7.6E-22 | IPR039512 |
| Pfam | PF05495 | CHY zinc finger | 643 | 705 | 8.8E-8 | IPR008913 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 319 | 463 | 2.0E-7 | IPR012312 |
| Pfam | PF05495 | CHY zinc finger | 643 | 705 | 8.8E-8 | IPR008913 |
| SUPERFAMILY | SSF57850 | RING/U-box | 758 | 805 | 3.22E-7 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 758 | 805 | 3.22E-7 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 696 | 752 | 2.75E-15 | IPR037275 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 696 | 752 | 2.75E-15 | IPR037275 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 752 | 803 | 7.9E-8 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 829 | 865 | 3.6E-17 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 313 | 526 | 1.1E-23 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 752 | 803 | 7.9E-8 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 829 | 865 | 3.6E-17 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 313 | 526 | 1.1E-23 | - |
| SMART | SM00184 | ring_2 | 759 | 800 | 4.9E-4 | IPR001841 |
| SMART | SM00184 | ring_2 | 759 | 800 | 4.9E-4 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 695 | 758 | 26.64477 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 759 | 801 | 10.92546 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 695 | 758 | 26.64477 | IPR017921 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 636 | 720 | 13.559179 | IPR008913 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 759 | 801 | 10.92546 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 636 | 720 | 13.559179 | IPR008913 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_006468730.1 | zinc finger protein BRUTUS-like isoform X1 [Citrus sinensis] | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C8YHY9 | Zinc finger protein BRUTUS OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology