Basic Information
Locus ID:
Lb1G01143
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
BEST Arabidopsis thaliana protein match is
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 184119325 | 184123967 | + | Lb1G01143 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.54 | 71,032.93 Da | 54.01 | 87.70 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04601 | Domain of unknown function (DUF569) | 1 | 150 | 5.8E-41 | IPR007679 |
| Pfam | PF04601 | Domain of unknown function (DUF569) | 226 | 395 | 6.7E-49 | IPR007679 |
| Pfam | PF04601 | Domain of unknown function (DUF569) | 226 | 395 | 6.7E-49 | IPR007679 |
| Pfam | PF04601 | Domain of unknown function (DUF569) | 1 | 150 | 5.8E-41 | IPR007679 |
| SUPERFAMILY | SSF50405 | Actin-crosslinking proteins | 9 | 151 | 2.45E-12 | IPR008999 |
| SUPERFAMILY | SSF50405 | Actin-crosslinking proteins | 231 | 400 | 4.19E-18 | IPR008999 |
| SUPERFAMILY | SSF50405 | Actin-crosslinking proteins | 231 | 400 | 4.19E-18 | IPR008999 |
| SUPERFAMILY | SSF50405 | Actin-crosslinking proteins | 9 | 151 | 2.45E-12 | IPR008999 |
| Gene3D | G3DSA:2.80.10.50 | - | 2 | 80 | 2.2E-8 | - |
| Gene3D | G3DSA:2.80.10.50 | - | 230 | 419 | 2.9E-11 | - |
| Gene3D | G3DSA:2.80.10.50 | - | 2 | 80 | 2.2E-8 | - |
| Gene3D | G3DSA:2.80.10.50 | - | 230 | 419 | 2.9E-11 | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G27100.1 | Actin cross-linking protein. | 0 |
| RefSeq | XP_031400311.1 | uncharacterized protein LOC116210553 [Punica granatum] | 0 |
| TrEMBL | A0A218WSZ9 | DUF569 domain-containing protein OS=Punica granatum OX=22663 GN=CDL15_Pgr009642 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology