Basic Information
Locus ID:
Lb1G01074
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
DEAD-box ATP-dependent RNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 175264379 | 175271854 | - | Lb1G01074 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.52 | 130,000.23 Da | 56.29 | 57.98 | -0.80 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 722 | 851 | 1.9063E-61 | - |
| CDD | cd18787 | SF2_C_DEAD | 722 | 851 | 1.9063E-61 | - |
| CDD | cd00201 | WW | 23 | 54 | 7.50329E-5 | IPR001202 |
| CDD | cd00201 | WW | 23 | 54 | 7.50329E-5 | IPR001202 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 527 | 697 | 5.2E-50 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 734 | 842 | 1.0E-32 | IPR001650 |
| Pfam | PF00397 | WW domain | 22 | 52 | 3.5E-7 | IPR001202 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 527 | 697 | 5.2E-50 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 734 | 842 | 1.0E-32 | IPR001650 |
| Pfam | PF00397 | WW domain | 22 | 52 | 3.5E-7 | IPR001202 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 574 | 858 | 8.8E-77 | IPR027417 |
| SUPERFAMILY | SSF51045 | WW domain | 14 | 53 | 3.59E-8 | IPR036020 |
| SUPERFAMILY | SSF51045 | WW domain | 14 | 53 | 3.59E-8 | IPR036020 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 574 | 858 | 8.8E-77 | IPR027417 |
| Gene3D | G3DSA:2.20.70.10 | - | 17 | 68 | 5.2E-6 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 713 | 884 | 3.2E-59 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 480 | 712 | 7.4E-87 | IPR027417 |
| Gene3D | G3DSA:2.20.70.10 | - | 17 | 68 | 5.2E-6 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 480 | 712 | 7.4E-87 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 713 | 884 | 3.2E-59 | IPR027417 |
| SMART | SM00456 | ww_5 | 21 | 54 | 1.2E-7 | IPR001202 |
| SMART | SM00487 | ultradead3 | 522 | 725 | 3.6E-65 | IPR014001 |
| SMART | SM00490 | helicmild6 | 762 | 842 | 2.7E-34 | IPR001650 |
| SMART | SM00456 | ww_5 | 21 | 54 | 1.2E-7 | IPR001202 |
| SMART | SM00487 | ultradead3 | 522 | 725 | 3.6E-65 | IPR014001 |
| SMART | SM00490 | helicmild6 | 762 | 842 | 2.7E-34 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 503 | 531 | 9.681471 | IPR014014 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 534 | 708 | 32.125164 | IPR014001 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 20 | 54 | 11.8021 | IPR001202 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 503 | 531 | 9.681471 | IPR014014 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 20 | 54 | 11.8021 | IPR001202 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 737 | 881 | 25.840504 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 534 | 708 | 32.125164 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 737 | 881 | 25.840504 | IPR001650 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 26 | 52 | - | IPR001202 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 654 | 662 | - | IPR000629 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 654 | 662 | - | IPR000629 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 26 | 52 | - | IPR001202 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1099 | 1123 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 940 | 1160 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1099 | 1123 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1031 | 1045 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1004 | 1018 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 54 | 80 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1130 | 1155 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 940 | 1160 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1058 | 1092 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1004 | 1018 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1031 | 1045 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 54 | 80 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1130 | 1155 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1058 | 1092 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06480.1 | DEAD box RNA helicase family protein. | 0 |
| RefSeq | XP_018833880.1 | DEAD-box ATP-dependent RNA helicase 40 isoform X2 [Juglans regia] | 0 |
| Q9SQV1 | DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana OX=3702 GN=RH40 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2I4FQE3 | DEAD-box ATP-dependent RNA helicase 40 isoform X2 OS=Juglans regia OX=51240 GN=LOC109001168 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology