HalophFGD

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Basic Information
Locus ID: Lb1G00954
Species & Taxonomic ID: Limonium bicolor & 293754
Genome Assembly: GCA_023374045.1
Description: Pentatricopeptide repeat-containing protein
Maps and Mapping Data
Chromosome Start End Strand ID
chr01 157204363 157205890 + Lb1G00954
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
8.76 50,530.98 Da 37.40 82.33 -0.30
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF01535 PPR repeat 103 130 0.0036 IPR002885
Pfam PF12854 PPR repeat 379 409 1.4E-7 IPR002885
Pfam PF13041 PPR repeat family 272 322 3.1E-13 IPR002885
Pfam PF13041 PPR repeat family 201 243 3.2E-7 IPR002885
Pfam PF01535 PPR repeat 103 130 0.0036 IPR002885
Pfam PF01535 PPR repeat 171 196 0.015 IPR002885
Pfam PF01535 PPR repeat 171 196 0.015 IPR002885
Pfam PF13041 PPR repeat family 201 243 3.2E-7 IPR002885
Pfam PF13041 PPR repeat family 272 322 3.1E-13 IPR002885
Pfam PF12854 PPR repeat 379 409 1.4E-7 IPR002885
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 137 247 3.7E-22 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 340 442 4.3E-14 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 46 136 6.6E-8 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 137 247 3.7E-22 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 248 339 3.4E-22 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 46 136 6.6E-8 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 340 442 4.3E-14 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 248 339 3.4E-22 IPR011990
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 385 416 1.1E-5 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 205 236 0.0011 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 103 131 5.1E-5 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 312 346 1.2E-5 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 385 416 1.1E-5 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 205 236 0.0011 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 277 310 5.9E-9 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 312 346 1.2E-5 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 277 310 5.9E-9 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 103 131 5.1E-5 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 382 416 11.158661 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 99 133 9.251395 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 99 133 9.251395 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 202 236 11.509422 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 382 416 11.158661 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 309 339 8.659485 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 273 308 12.386327 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 273 308 12.386327 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 309 339 8.659485 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 202 236 11.509422 IPR002885
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
Best hit
Source Best Hit ID Description E-value
TAIR AT3G04130.1 Tetratricopeptide repeat (TPR)-like superfamily protein. 0
RefSeq XP_021674113.1 pentatricopeptide repeat-containing protein At3g04130, mitochondrial [Hevea brasiliensis] 0
Swiss-Prot Q9M8W9 Pentatricopeptide repeat-containing protein At3g04130, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g04130 PE=2 SV=2 0
TrEMBL A0A8K0DNN3 Pentatricopeptide repeat-containing protein At3g04130, mitochondrial OS=Rhamnella rubrinervis OX=2594499 GN=FNV43_RR25830 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Acanthaceae Avicennia marina 2 jg5752, jg9557
Aizoaceae Mesembryanthemum crystallinum 2 gene_3540, gene_5373
Amaranthaceae Beta vulgaris 1 BVRB_6g151540
Amaranthaceae Salicornia bigelovii 4 Sbi_jg26547, Sbi_jg34020, Sbi_jg42730, Sbi_jg45355
Amaranthaceae Salicornia europaea 2 Seu_jg11218, Seu_jg15074
Amaranthaceae Suaeda aralocaspica 1 GOSA_00002583
Amaranthaceae Suaeda glauca 4 Sgl35089, Sgl40474, Sgl73833, Sgl77335
Amaranthaceae Chenopodium album 4 gene:ENSEOMG00000002884, gene:ENSEOMG00000006357 ...
gene:ENSEOMG00000015373, gene:ENSEOMG00000037249
Amaranthaceae Chenopodium quinoa 3 CQ.Regalona.r1.6AG0003540, CQ.Regalona.r1.6BG0003500 ...
CQ.Regalona.r1.7AG0010320
Anacardiaceae Pistacia vera 2 pistato.v30228080, pistato.v30236350
Apiaceae Apium graveolens 2 Ag1G01844, Ag5G02278
Arecaceae Cocos nucifera 3 COCNU_03G001310, COCNU_03G001330, COCNU_04G007320
Arecaceae Phoenix dactylifera 2 gene-LOC103718091, gene-LOC103718684
Asparagaceae Asparagus officinalis 2 AsparagusV1_03.2689.V1.1, AsparagusV1_08.1881.V1.1
Asteraceae Flaveria trinervia 2 Ftri15G22017, Ftri9G15803
Brassicaceae Arabidopsis thaliana 2 AT3G04130.1, AT3G22670.1
Brassicaceae Eutrema salsugineum 2 Thhalv10020419m.g.v1.0, Thhalv10020548m.g.v1.0
Brassicaceae Schrenkiella parvula 2 Sp3g03100.v2.2, Sp3g20430.v2.2
Brassicaceae Brassica nigra 4 BniB01g059340.2N, BniB03g024780.2N, BniB07g032460.2N ...
BniB07g032470.2N
Casuarinaceae Casuarina equisetifolia 1 Ceq07G1278
Casuarinaceae Casuarina glauca 1 Cgl07G1351
Cymodoceaceae Cymodocea nodosa 2 gene.Cymno05g03570, gene.Cymno09g09580
Hydrocharitaceae Thalassia testudinum 1 gene.Thate03g04160
Nitrariaceae Nitraria sibirica 2 evm.TU.LG03.712, evm.TU.LG11.999
Plantaginaceae Plantago ovata 2 Pov_00021764, Pov_00022238
Plumbaginaceae Limonium bicolor 2 Lb1G00954, Lb1G08048
Poaceae Echinochloa crus-galli 4 BH01.2664, BH01.761, CH01.757, Contig309.108
Poaceae Eleusine coracana subsp. coracana 4 gene-QOZ80_2AG0136490, gene-QOZ80_2BG0192130 ...
gene-QOZ80_3AG0216460, gene-QOZ80_3BG0261780
Poaceae Hordeum vulgare 2 HORVU.MOREX.r3.5HG0510080.1.CDS1 ...
HORVU.MOREX.r3.6HG0592070.1.CDS1
Poaceae Lolium multiflorum 2 gene-QYE76_023481, gene-QYE76_061911
Poaceae Oryza coarctata 3 Oco03G014520, Oco04G014970, Oco06G024280
Poaceae Oryza sativa 1 LOC_Os02g38950.1
Poaceae Paspalum vaginatum 2 gene-BS78_01G083600, gene-BS78_04G186700
Poaceae Sporobolus alterniflorus 4 Chr01G005430, Chr09G012410, Chr12G037810, Chr13G008330
Poaceae Thinopyrum elongatum 1 Tel6E01G415700
Poaceae Triticum dicoccoides 4 gene_TRIDC5AG056230, gene_TRIDC5BG060280 ...
gene_TRIDC6AG033070, gene_TRIDC6BG039410
Poaceae Triticum aestivum 6 TraesCS5A02G384400.1.cds1, TraesCS5B02G389200.1.cds1 ...
TraesCS5D02G394000.1.cds1, TraesCS6A02G213800.1.cds1, TraesCS6B02G243800.1.cds1, TraesCS6D02G196400.1.cds1
Poaceae Zea mays 2 Zm00001eb057030_P001, Zm00001eb246390_P001
Poaceae Zoysia japonica 1 nbis-gene-23463
Poaceae Zoysia macrostachya 2 Zma_g13832, Zma_g494
Portulacaceae Portulaca oleracea 2 evm.TU.LG02.2560, evm.TU.LG13.94
Posidoniaceae Posidonia oceanica 3 gene.Posoc01g07610, gene.Posoc04g01610, gene.Posoc05g00670
Rhizophoraceae Bruguiera sexangula 2 evm.TU.Scaffold_17_RagTag.159, evm.TU.Scaffold_6_RagTag.775
Rhizophoraceae Carallia pectinifolia 2 nbisL1-mrna-15921, nbisL1-mrna-23199
Rhizophoraceae Ceriops tagal 2 nbisL1-mrna-16773, nbisL1-mrna-9301
Rhizophoraceae Ceriops zippeliana 2 nbisL1-mrna-14672, nbisL1-mrna-649
Rhizophoraceae Kandelia candel 2 add.evm.TU.utg000011l.190, add.evm.TU.utg000013l.29
Rhizophoraceae Kandelia obovata 1 Maker00006512
Rhizophoraceae Rhizophora apiculata 2 nbisL1-mrna-19530, nbisL1-mrna-22921
Rhizophoraceae Rhizophora mangle 2 nbisL1-mrna-15954, nbisL1-mrna-3499
Salicaceae Populus euphratica 5 populus_peu07647, populus_peu21418, populus_peu21419 ...
populus_peu21420, populus_peu21689
Solanaceae Lycium barbarum 2 gene-LOC132609668, gene-LOC132641233
Solanaceae Solanum chilense 2 SOLCI004820900, SOLCI007024500
Solanaceae Solanum pennellii 2 gene-LOC107020744, gene-LOC107031368
Tamaricaceae Reaumuria soongarica 2 STRG.19726_chr07_+, gene_15533
Tamaricaceae Tamarix chinensis 2 TC04G0518, TC09G0412
Zosteraceae Zostera marina 3 Zosma01g34550.v3.1, Zosma01g40775.v3.1, Zosma04g00720.v3.1
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.