Basic Information
Locus ID:
Lb1G00933
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 153368979 | 153373320 | + | Lb1G00933 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.02 | 48,399.98 Da | 53.16 | 65.96 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16729 | RING-HC_RGLG_plant | 394 | 438 | 8.55289E-25 | - |
| CDD | cd16729 | RING-HC_RGLG_plant | 394 | 438 | 8.55289E-25 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 393 | 432 | 7.9E-8 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 393 | 432 | 7.9E-8 | - |
| Pfam | PF07002 | Copine | 115 | 318 | 2.8E-63 | IPR010734 |
| Pfam | PF07002 | Copine | 115 | 318 | 2.8E-63 | IPR010734 |
| SUPERFAMILY | SSF57850 | RING/U-box | 394 | 434 | 8.83E-6 | - |
| SUPERFAMILY | SSF53300 | vWA-like | 95 | 265 | 1.56E-6 | IPR036465 |
| SUPERFAMILY | SSF53300 | vWA-like | 95 | 265 | 1.56E-6 | IPR036465 |
| SUPERFAMILY | SSF57850 | RING/U-box | 394 | 434 | 8.83E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 387 | 438 | 1.8E-10 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 387 | 438 | 1.8E-10 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 395 | 428 | 10.895954 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 395 | 428 | 10.895954 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 17 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 18 | 44 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 67 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 18 | 44 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 17 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 67 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G14420.1 | RING domain ligase2. | 0 |
| RefSeq | XP_021854040.1 | E3 ubiquitin-protein ligase RGLG5-like [Spinacia oleracea] | 0 |
| Q9LY87 | E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis thaliana OX=3702 GN=RGLG2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9S1W1 | RING-type E3 ubiquitin transferase OS=Spinacia oleracea OX=3562 GN=SOVF_003210 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology