Basic Information
Locus ID:
Lb1G00868
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
cysteine-rich RLK (RECEPTOR-like protein kinase) 8
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 141266504 | 141276292 | - | Lb1G00868 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.69 | 95,474.16 Da | 46.08 | 74.98 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09272 | RNase_HI_RT_Ty1 | 704 | 816 | 1.21655E-58 | - |
| CDD | cd00051 | EFh | 13 | 73 | 7.94821E-15 | IPR002048 |
| CDD | cd00051 | EFh | 91 | 152 | 7.36836E-18 | IPR002048 |
| CDD | cd00051 | EFh | 13 | 73 | 7.94821E-15 | IPR002048 |
| CDD | cd09272 | RNase_HI_RT_Ty1 | 704 | 816 | 1.21655E-58 | - |
| CDD | cd00051 | EFh | 91 | 152 | 7.36836E-18 | IPR002048 |
| Pfam | PF14223 | gag-polypeptide of LTR copia-type | 244 | 390 | 5.7E-10 | - |
| Pfam | PF13499 | EF-hand domain pair | 13 | 72 | 2.5E-10 | IPR002048 |
| Pfam | PF14223 | gag-polypeptide of LTR copia-type | 244 | 390 | 5.7E-10 | - |
| Pfam | PF13499 | EF-hand domain pair | 13 | 72 | 2.5E-10 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 91 | 152 | 6.0E-12 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 91 | 152 | 6.0E-12 | IPR002048 |
| Pfam | PF14244 | gag-polypeptide of LTR copia-type | 190 | 234 | 2.1E-13 | IPR029472 |
| Pfam | PF14244 | gag-polypeptide of LTR copia-type | 190 | 234 | 2.1E-13 | IPR029472 |
| SUPERFAMILY | SSF47473 | EF-hand | 4 | 152 | 3.75E-39 | IPR011992 |
| SUPERFAMILY | SSF47473 | EF-hand | 4 | 152 | 3.75E-39 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 1 | 80 | 3.5E-18 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 81 | 157 | 1.9E-21 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 81 | 157 | 1.9E-21 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 1 | 80 | 3.5E-18 | - |
| SMART | SM00054 | efh_1 | 91 | 119 | 2.6E-4 | IPR002048 |
| SMART | SM00054 | efh_1 | 47 | 75 | 0.1 | IPR002048 |
| SMART | SM00054 | efh_1 | 11 | 39 | 1.1 | IPR002048 |
| SMART | SM00054 | efh_1 | 91 | 119 | 2.6E-4 | IPR002048 |
| SMART | SM00054 | efh_1 | 11 | 39 | 1.1 | IPR002048 |
| SMART | SM00054 | efh_1 | 47 | 75 | 0.1 | IPR002048 |
| SMART | SM00054 | efh_1 | 127 | 155 | 5.3E-6 | IPR002048 |
| SMART | SM00054 | efh_1 | 127 | 155 | 5.3E-6 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 87 | 122 | 14.206556 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 123 | 158 | 11.919133 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 7 | 42 | 11.919133 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 87 | 122 | 14.206556 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 43 | 78 | 10.719631 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 43 | 78 | 10.719631 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 123 | 158 | 11.919133 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 7 | 42 | 11.919133 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 20 | 32 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 136 | 148 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 56 | 68 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 100 | 112 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 56 | 68 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 136 | 148 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 100 | 112 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 20 | 32 | - | IPR018247 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 679 | 707 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 679 | 707 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 679 | 705 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 679 | 705 | - | - |
| Coils | Coil | Coil | 673 | 693 | - | - |
| Coils | Coil | Coil | 673 | 693 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25600.1 | Calcium-binding EF-hand family protein. | 0 |
| RefSeq | XP_042756655.1 | uncharacterized protein LOC111883229 [Lactuca sativa] | 0 |
| Q9LI84 | Probable calcium-binding protein CML16 OS=Arabidopsis thaliana OX=3702 GN=CML16 PE=2 SV=2 | 0 | |
| TrEMBL | A0A7C8ZJE3 | Retrotran_gag_3 domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology