Basic Information
Locus ID:
Lb1G00810
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 133318569 | 133322230 | - | Lb1G00810 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.68 | 43,392.98 Da | 50.16 | 70.56 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16789 | mRING-HC-C3HC5_MGRN1_like---blasttree | 333 | 373 | 3.65474E-28 | - |
| CDD | cd16789 | mRING-HC-C3HC5_MGRN1_like---blasttree | 333 | 373 | 3.65474E-28 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 332 | 378 | 7.9E-16 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 332 | 378 | 7.9E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 333 | 379 | 1.34E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 333 | 379 | 1.34E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 316 | 383 | 4.6E-17 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 316 | 383 | 4.6E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 334 | 372 | 2.6E-4 | IPR001841 |
| SMART | SM00184 | ring_2 | 334 | 372 | 2.6E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 334 | 373 | 11.161508 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 334 | 373 | 11.161508 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 34 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 34 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G09770.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_034693591.1 | probable E3 ubiquitin-protein ligase LOG2 [Vitis riparia] | 0 |
| Q9S752 | Probable E3 ubiquitin-protein ligase LOG2 OS=Arabidopsis thaliana OX=3702 GN=LOG2 PE=1 SV=1 | 0 | |
| TrEMBL | F6HR19 | RING-type E3 ubiquitin transferase OS=Vitis vinifera OX=29760 GN=VIT_08s0040g01940 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology