Basic Information
Locus ID:
Lb1G00731
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
40S ribosomal protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 122217885 | 122221030 | + | Lb1G00731 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.62 | 11,134.94 Da | 40.65 | 82.45 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00338 | Ribosomal protein S10p/S20e | 25 | 95 | 1.3E-21 | IPR027486 |
| Pfam | PF00338 | Ribosomal protein S10p/S20e | 25 | 95 | 1.3E-21 | IPR027486 |
| SUPERFAMILY | SSF54999 | Ribosomal protein S10 | 22 | 96 | 2.35E-22 | IPR036838 |
| SUPERFAMILY | SSF54999 | Ribosomal protein S10 | 22 | 96 | 2.35E-22 | IPR036838 |
| Gene3D | G3DSA:3.30.70.600 | Ribosomal protein S10 domain | 7 | 98 | 6.9E-34 | IPR036838 |
| Gene3D | G3DSA:3.30.70.600 | Ribosomal protein S10 domain | 7 | 98 | 6.9E-34 | IPR036838 |
| SMART | SM01403 | Ribosomal_S10_2 | 24 | 98 | 8.0E-15 | IPR027486 |
| SMART | SM01403 | Ribosomal_S10_2 | 24 | 98 | 8.0E-15 | IPR027486 |
| TIGRFAM | TIGR01046 | uS10_euk_arch: ribosomal protein uS10 | 21 | 96 | 2.0E-28 | IPR005729 |
| TIGRFAM | TIGR01046 | uS10_euk_arch: ribosomal protein uS10 | 21 | 96 | 2.0E-28 | IPR005729 |
| ProSitePatterns | PS00361 | Ribosomal protein S10 signature. | 46 | 61 | - | IPR018268 |
| ProSitePatterns | PS00361 | Ribosomal protein S10 signature. | 46 | 61 | - | IPR018268 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 79 | 93 | 1.2E-11 | IPR001848 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 22 | 35 | 1.2E-11 | IPR001848 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 57 | 72 | 1.2E-11 | IPR001848 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 79 | 93 | 1.2E-11 | IPR001848 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 22 | 35 | 1.2E-11 | IPR001848 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 57 | 72 | 1.2E-11 | IPR001848 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G47370.1 | Ribosomal protein S10p/S20e family protein. | 0 |
| RefSeq | XP_024966579.1 | 40S ribosomal protein S20-2-like [Cynara cardunculus var. scolymus] | 0 |
| Q9STY6 | Small ribosomal subunit protein uS10y OS=Arabidopsis thaliana OX=3702 GN=RPS20B PE=2 SV=1 | 0 | |
| TrEMBL | A0A2J6L844 | Ribosomal_S10 domain-containing protein OS=Lactuca sativa OX=4236 GN=LSAT_8X80580 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology