Basic Information
Locus ID:
Lb1G00689
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
AMSH-like ubiquitin thioesterase 2
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 118289387 | 118293007 | + | Lb1G00689 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.34 | 25,680.53 Da | 58.47 | 81.31 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 43 | 229 | 9.16428E-99 | IPR044098 |
| CDD | cd08066 | MPN_AMSH_like | 43 | 229 | 9.16428E-99 | IPR044098 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 43 | 149 | 7.8E-16 | IPR000555 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 43 | 149 | 7.8E-16 | IPR000555 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 44 | 175 | 8.5E-21 | - |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 44 | 175 | 8.5E-21 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 26 | 229 | 7.8E-66 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 26 | 229 | 7.8E-66 | - |
| SMART | SM00232 | pad1_6 | 45 | 173 | 7.9E-11 | IPR000555 |
| SMART | SM00232 | pad1_6 | 45 | 173 | 7.9E-11 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 46 | 174 | 27.875055 | IPR037518 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 46 | 174 | 27.875055 | IPR037518 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10600.1 | associated molecule with the SH3 domain of STAM 2. | 0 |
| RefSeq | XP_021842922.1 | AMSH-like ubiquitin thioesterase 2 isoform X2 [Spinacia oleracea] | 0 |
| Q6NKP9 | AMSH-like ubiquitin thioesterase 2 OS=Arabidopsis thaliana OX=3702 GN=AMSH2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9RVL5 | MPN domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_023760 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology