halophFGD

Basic Information

Locus ID: Lb1G00604

Species & Taxonomic ID: Limonium bicolor & 293754

Genome Assembly: GCA_023374045.1

Description: Belongs to the short-chain dehydrogenases reductases (SDR) family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr01	105570630	105573020	-	Lb1G00604

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.39	35,723.45 Da	22.44	104.42	0.06

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd05356	17beta-HSD1_like_SDR_c	54	293	6.59061E-117	-
CDD	cd05356	17beta-HSD1_like_SDR_c	54	293	6.59061E-117	-
Pfam	PF00106	short chain dehydrogenase	56	248	2.1E-40	IPR002347
Pfam	PF00106	short chain dehydrogenase	56	248	2.1E-40	IPR002347
SUPERFAMILY	SSF51735	NAD(P)-binding Rossmann-fold domains	53	300	2.15E-47	IPR036291
SUPERFAMILY	SSF51735	NAD(P)-binding Rossmann-fold domains	53	300	2.15E-47	IPR036291
Gene3D	G3DSA:3.40.50.720	-	50	276	1.3E-50	-
Gene3D	G3DSA:3.40.50.720	-	50	276	1.3E-50	-
PIRSF	PIRSF000126	11-beta-HSD1	7	315	5.1E-97	-
PIRSF	PIRSF000126	11-beta-HSD1	7	315	5.1E-97	-
ProSitePatterns	PS00061	Short-chain dehydrogenases/reductases family signature.	196	224	-	IPR020904
ProSitePatterns	PS00061	Short-chain dehydrogenases/reductases family signature.	196	224	-	IPR020904
PRINTS	PR00080	Short-chain dehydrogenase/reductase (SDR) superfamily signature	209	228	1.1E-6	IPR002347
PRINTS	PR00080	Short-chain dehydrogenase/reductase (SDR) superfamily signature	132	143	1.1E-6	IPR002347
PRINTS	PR00080	Short-chain dehydrogenase/reductase (SDR) superfamily signature	187	195	1.1E-6	IPR002347
PRINTS	PR00081	Glucose/ribitol dehydrogenase family signature	209	228	2.5E-16	IPR002347
PRINTS	PR00081	Glucose/ribitol dehydrogenase family signature	132	143	2.5E-16	IPR002347
PRINTS	PR00081	Glucose/ribitol dehydrogenase family signature	181	197	2.5E-16	IPR002347
PRINTS	PR00081	Glucose/ribitol dehydrogenase family signature	230	247	2.5E-16	IPR002347
PRINTS	PR00081	Glucose/ribitol dehydrogenase family signature	230	247	2.5E-16	IPR002347
PRINTS	PR00081	Glucose/ribitol dehydrogenase family signature	56	73	2.5E-16	IPR002347
PRINTS	PR00080	Short-chain dehydrogenase/reductase (SDR) superfamily signature	132	143	1.1E-6	IPR002347
PRINTS	PR00080	Short-chain dehydrogenase/reductase (SDR) superfamily signature	209	228	1.1E-6	IPR002347
PRINTS	PR00081	Glucose/ribitol dehydrogenase family signature	56	73	2.5E-16	IPR002347
PRINTS	PR00081	Glucose/ribitol dehydrogenase family signature	181	197	2.5E-16	IPR002347
PRINTS	PR00080	Short-chain dehydrogenase/reductase (SDR) superfamily signature	187	195	1.1E-6	IPR002347
PRINTS	PR00081	Glucose/ribitol dehydrogenase family signature	209	228	2.5E-16	IPR002347
PRINTS	PR00081	Glucose/ribitol dehydrogenase family signature	132	143	2.5E-16	IPR002347

Gene Ontology

Molecular Function:

GO:0016491 (oxidoreductase activity)

KEGG Pathway

KO Term:

K10251 (17beta-estradiol 17-dehydrogenase / very-long-chain 3-oxoacyl-CoA reductase [EC:1.1.1.62 1.1.1.330])

Pathway:

ko00062 (Fatty acid elongation) map00062 (Fatty acid elongation) ko00140 (Steroid hormone biosynthesis) map00140 (Steroid hormone biosynthesis) ko01040 (Biosynthesis of unsaturated fatty acids) map01040 (Biosynthesis of unsaturated fatty acids) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites) ko01212 (Fatty acid metabolism) map01212 (Fatty acid metabolism)

Module:

M00415 (Fatty acid elongation in endoplasmic reticulum)

Reaction:

R02352 (Estradiol-17beta + NAD+ <=> Estrone + NADH + H+) R02353 (Estradiol-17beta + NADP+ <=> Estrone + NADPH + H+) R04681 (Estriol + NAD+ <=> 16alpha-Hydroxyestrone + NADH + H+) R04682 (Estriol + NADP+ <=> 16alpha-Hydroxyestrone + NADPH + H+) R07759 (3-Oxostearoyl-CoA + NADPH + H+ <=> 3-Hydroxyoctadecanoyl-CoA + NADP+) R08945 (11beta,17beta-Dihydroxy-4-androsten-3-one + NAD+ <=> 11beta-Hydroxyandrost-4-ene-3,17-dione + NADH + H+) R08980 (11beta,17beta-Dihydroxy-4-androsten-3-one + NADP+ <=> 11beta-Hydroxyandrost-4-ene-3,17-dione + NADPH + H+) R10826 (Very-long-chain (3R)-3-hydroxyacyl-CoA + NADP+ <=> Very-long-chain 3-oxoacyl-CoA + NADPH + H+)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G67730.1	beta-ketoacyl reductase 1. Encodes one of the two Arabidopsis homologues to YBR159w encoding a S. cerevisiae beta-ketoacyl reductase (KCR), which catalyzes the first reduction during VLCFA (very long chain fatty acids, >18 carbon) elongation: KCR1 (At1g67730), KCR2 (At1g24470). Complementation of the yeast ybr159Delta mutant demonstrated that the two KCR proteins are divergent and that only AtKCR1 can restore heterologous elongase activity similar to the native yeast KCR gene.
RefSeq	XP_010682376.2	very-long-chain 3-oxoacyl-CoA reductase 1 [Beta vulgaris subsp. vulgaris]
Swiss-Prot	Q8L9C4	Very-long-chain 3-oxoacyl-CoA reductase 1 OS=Arabidopsis thaliana OX=3702 GN=KCR1 PE=1 SV=1
TrEMBL	A0A6P5SWH9	very-long-chain 3-oxoacyl-CoA reductase 1-like OS=Prunus avium OX=42229 GN=LOC110760517 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	7	jg19875, jg30447, jg34565, jg40418, jg40422, jg40423, jg6988
Aizoaceae	Mesembryanthemum crystallinum	6	gene_18059, gene_18062, gene_18063, gene_18064, gene_18065 ... gene_18066
Amaranthaceae	Atriplex hortensis	3	Ah013806, Ah013808, Ah013811
Amaranthaceae	Beta vulgaris	2	BVRB_6g147510, BVRB_6g147520
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg42762, Sbi_jg42764, Sbi_jg45391, Sbi_jg45392
Amaranthaceae	Salicornia europaea	3	Seu_jg11245, Seu_jg11253, Seu_jg11254
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00002546, GOSA_00002547, GOSA_00016855
Amaranthaceae	Suaeda glauca	9	Sgl35128, Sgl35129, Sgl35138, Sgl35139, Sgl40513, Sgl40520 ... Sgl40521, Sgl40522, Sgl40523
Amaranthaceae	Chenopodium album	8	gene:ENSEOMG00000000786, gene:ENSEOMG00000001606 ... gene:ENSEOMG00000012825, gene:ENSEOMG00000013914, gene:ENSEOMG00000014413, gene:ENSEOMG00000024279, gene:ENSEOMG00000028255, gene:ENSEOMG00000028460
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.6AG0003770, CQ.Regalona.r1.6AG0003780 ... CQ.Regalona.r1.6AG0003790, CQ.Regalona.r1.6BG0003800, CQ.Regalona.r1.6BG0003830
Anacardiaceae	Pistacia vera	9	pistato.v30227730, pistato.v30227740, pistato.v30227770 ... pistato.v30227780, pistato.v30295680, pistato.v30295690, pistato.v30295720, pistato.v30295730, pistato.v30295740
Apiaceae	Apium graveolens	4	Ag1G00561, Ag2G02004, Ag4G00731, Ag5G02259
Arecaceae	Cocos nucifera	3	COCNU_02G013290, COCNU_08G003600, scaffold003116G000100
Arecaceae	Phoenix dactylifera	3	gene-LOC103711599, gene-LOC103714454, gene-LOC103720290
Asparagaceae	Asparagus officinalis	3	AsparagusV1_02.1091.V1.1, AsparagusV1_09.1241.V1.1 ... AsparagusV1_10.1756.V1.1
Asteraceae	Flaveria trinervia	2	Ftri11G21139, Ftri5G22031
Brassicaceae	Arabidopsis thaliana	2	AT1G24470.1, AT1G67730.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10008291m.g.v1.0, Thhalv10018890m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp1g23330.v2.2, Sp5g22740.v2.2
Brassicaceae	Brassica nigra	4	BniB03g032410.2N, BniB03g044980.2N, BniB04g041500.2N ... BniB05g064250.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq07G1306
Casuarinaceae	Casuarina glauca	2	Cgl07G1379, Cgl07G1380
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno07g10560, gene.Cymno08g00310, gene.Cymno08g01710
Dunaliellaceae	Dunaliella salina	1	Dusal.0031s00042.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate04g23450, gene.Thate04g23470, gene.Thate05g15500
Nitrariaceae	Nitraria sibirica	5	evm.TU.LG03.681, evm.TU.LG03.682, evm.TU.LG03.684 ... evm.TU.LG03.686, evm.TU.LG03.689
Plantaginaceae	Plantago ovata	3	Pov_00024211, Pov_00034804, Pov_00034806
Plumbaginaceae	Limonium bicolor	3	Lb1G00604, Lb1G01778, Lb2G09056
Poaceae	Echinochloa crus-galli	23	AH06.1217, AH06.1218, AH06.1221, AH07.2479, AH09.1350 ... AH09.1351, BH04.997, BH06.1264, BH06.1265, BH06.1267, BH06.1268, BH07.2285, BH09.1530, BH09.1531, CH04.1153, CH06.1399, CH06.1402, CH06.1403, CH06.1407, CH07.2360, CH09.1641, CH09.1642, CH09.1643
Poaceae	Eleusine coracana subsp. coracana	17	gene-QOZ80_2AG0136350, gene-QOZ80_2BG0192260 ... gene-QOZ80_4AG0313130, gene-QOZ80_4BG0344250, gene-QOZ80_6AG0518020, gene-QOZ80_6AG0518040, gene-QOZ80_6AG0518080, gene-QOZ80_6AG0518250, gene-QOZ80_6AG0519270, gene-QOZ80_6BG0470020, gene-QOZ80_6BG0470090, gene-QOZ80_6BG0470110, gene-QOZ80_6BG0470140, gene-QOZ80_6BG0470250, gene-QOZ80_6BG0470290, gene-QOZ80_9AG0682060, gene-QOZ80_9BG0706210
Poaceae	Hordeum vulgare	17	HORVU.MOREX.r3.1HG0047670.1, HORVU.MOREX.r3.1HG0086670.1 ... HORVU.MOREX.r3.2HG0176510.1, HORVU.MOREX.r3.2HG0176560.1, HORVU.MOREX.r3.4HG0389590.1, HORVU.MOREX.r3.5HG0499960.1.CDS1, HORVU.MOREX.r3.6HG0591390.1, HORVU.MOREX.r3.7HG0636030.1, HORVU.MOREX.r3.7HG0647790.1, HORVU.MOREX.r3.7HG0649580.1, HORVU.MOREX.r3.7HG0652210.1, HORVU.MOREX.r3.7HG0653780.1, HORVU.MOREX.r3.7HG0674250.1, HORVU.MOREX.r3.7HG0674260.1, HORVU.MOREX.r3.7HG0674270.1, HORVU.MOREX.r3.7HG0674310.1, HORVU.MOREX.r3.7HG0746580.1
Poaceae	Lolium multiflorum	12	gene-QYE76_011826, gene-QYE76_013368, gene-QYE76_020063 ... gene-QYE76_020069, gene-QYE76_020072, gene-QYE76_027851, gene-QYE76_044736, gene-QYE76_046547, gene-QYE76_046548, gene-QYE76_049044, gene-QYE76_066274, gene-QYE76_071351
Poaceae	Oryza coarctata	8	Oco04G014810, Oco07G000850, Oco07G008890, Oco08G000440 ... Oco08G008830, Oco11G007740, Oco11G007760, Oco21G004950
Poaceae	Oryza sativa	10	LOC_Os02g38440.1, LOC_Os04g02620.1, LOC_Os04g40730.1 ... LOC_Os06g19500.1, LOC_Os06g19530.1, LOC_Os06g19540.1, LOC_Os06g19550.1, LOC_Os06g19590.1, LOC_Os06g19610.1, LOC_Os11g24484.1
Poaceae	Paspalum vaginatum	11	gene-BS78_03G107300, gene-BS78_04G185100, gene-BS78_K061700 ... gene-BS78_06G138800, gene-BS78_06G138900, gene-BS78_10G124700, gene-BS78_10G124800, gene-BS78_10G125100, gene-BS78_10G125600, gene-BS78_K061800, gene-BS78_K216000
Poaceae	Puccinellia tenuiflora	20	Pt_Chr0100671, Pt_Chr0100757, Pt_Chr0105112, Pt_Chr0107896 ... Pt_Chr0204462, Pt_Chr0206871, Pt_Chr0306059, Pt_Chr0307234, Pt_Chr0307235, Pt_Chr0403626, Pt_Chr0403642, Pt_Chr0404346, Pt_Chr0404349, Pt_Chr0404376, Pt_Chr0404380, Pt_Chr0404495, Pt_Chr0404525, Pt_Chr0502844, Pt_Chr0601072, Pt_Ctg00201
Poaceae	Sporobolus alterniflorus	13	Chr06G007710, Chr09G012470, Chr10G001260, Chr11G017470 ... Chr11G017480, Chr13G008380, Chr14G005730, Chr15G009320, Chr16G007270, Chr21G005430, Chr21G005460, Chr21G006320, Chr26G009420
Poaceae	Thinopyrum elongatum	21	Tel1E01G004700, Tel1E01G008200, Tel1E01G309800 ... Tel2E01G023500, Tel2E01G023700, Tel2E01G023800, Tel2E01G594200, Tel2E01G594400, Tel2E01G594500, Tel2E01G824500, Tel3E01G718400, Tel4E01G375200, Tel5E01G430600, Tel6E01G412900, Tel7E01G193000, Tel7E01G230200, Tel7E01G399000, Tel7E01G399100, Tel7E01G399200, Tel7E01G399400, Tel7E01G919000
Poaceae	Triticum dicoccoides	31	gene_TRIDC1AG025690, gene_TRIDC1BG031330 ... gene_TRIDC1BG066340, gene_TRIDC2AG049680, gene_TRIDC2AG049690, gene_TRIDC2AG068630, gene_TRIDC2BG052540, gene_TRIDC2BG052570, gene_TRIDC2BG074170, gene_TRIDC3AG064190, gene_TRIDC3BG072220, gene_TRIDC4AG012340, gene_TRIDC4AG060770, gene_TRIDC4AG060800, gene_TRIDC4AG064730, gene_TRIDC4BG038010, gene_TRIDC5AG040710, gene_TRIDC5AG040720, gene_TRIDC5BG044470, gene_TRIDC6AG032940, gene_TRIDC6BG039200, gene_TRIDC7AG011060, gene_TRIDC7AG012600, gene_TRIDC7AG027800, gene_TRIDC7AG027830, gene_TRIDC7AG027900, gene_TRIDC7BG001690, gene_TRIDC7BG018680, gene_TRIDC7BG018690, gene_TRIDC7BG018710, gene_TRIDC7BG018730
Poaceae	Triticum aestivum	48	TraesCS1A02G168500.1, TraesCS1B02G188400.1 ... TraesCS1B02G419500.1, TraesCS1D02G166500.1, TraesCS1D02G399700.1, TraesCS2A02G321300.1, TraesCS2A02G321400.1, TraesCS2A02G486900.1.cds1, TraesCS2B02G361100.1, TraesCS2B02G361200.1, TraesCS2B02G513700.1.cds1, TraesCS2D02G342100.1, TraesCS2D02G342200.1, TraesCS2D02G486900.1.cds1, TraesCS3A02G453800.1, TraesCS3B02G492200.1, TraesCS3D02G446400.1, TraesCS4A02G090900.1, TraesCS4B02G213800.1, TraesCS4D02G214500.1, TraesCS5A02G268900.1, TraesCS5B02G268900.1, TraesCS5D02G276700.1, TraesCS6A02G213100.1, TraesCS6B02G241000.1, TraesCS6D02G194600.1, TraesCS7A02G094200.1, TraesCS7A02G220900.1, TraesCS7A02G221300.1, TraesCS7A02G221400.1, TraesCS7A02G221500.1, TraesCS7A02G527800.1, TraesCS7B02G012900.1, TraesCS7B02G126200.1, TraesCS7B02G126300.1, TraesCS7B02G126400.1, TraesCS7B02G126500.1, TraesCS7B02G444500.1, TraesCS7D02G076100.1, TraesCS7D02G088400.1, TraesCS7D02G089600.2, TraesCS7D02G102600.1, TraesCS7D02G103000.2, TraesCS7D02G111100.1, TraesCS7D02G221000.2, TraesCS7D02G221100.1, TraesCS7D02G221200.1, TraesCS7D02G515700.1.cds1
Poaceae	Zea mays	4	Zm00001eb017070_P001, Zm00001eb183950_P001 ... Zm00001eb246270_P001, Zm00001eb381100_P001
Poaceae	Zoysia japonica	8	nbis-gene-18596, nbis-gene-29742, nbis-gene-35972 ... nbis-gene-36913, nbis-gene-45610, nbis-gene-45611, nbis-gene-52619, nbis-gene-52622
Poaceae	Zoysia macrostachya	7	Zma_g13823, Zma_g17862, Zma_g19934, Zma_g29533, Zma_g29535 ... Zma_g31772, Zma_g31773
Portulacaceae	Portulaca oleracea	8	evm.TU.LG03.1381, evm.TU.LG03.1384, evm.TU.LG03.1385 ... evm.TU.LG12.25, evm.TU.LG12.26, evm.TU.LG12.27, evm.TU.LG13.122, evm.TU.LG13.123
Posidoniaceae	Posidonia oceanica	2	gene.Posoc05g01440, gene.Posoc05g07680
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.60444.10, evm.TU.Scaffold_15_RagTag.819 ... evm.TU.Scaffold_17_RagTag.18
Rhizophoraceae	Carallia pectinifolia	5	nbisL1-mrna-23177, nbisL1-mrna-27006, nbisL1-mrna-27007 ... nbisL1-mrna-27195, nbisL1-mrna-27196
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-14582, nbisL1-mrna-9289
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-14690, nbisL1-mrna-15581
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000001l.450, evm.TU.utg000013l.111
Rhizophoraceae	Kandelia obovata	2	Maker00002439, Maker00006422
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-11210, nbisL1-mrna-11211, nbisL1-mrna-7021
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-15937, nbisL1-mrna-17700, nbisL1-mrna-17701
Salicaceae	Populus euphratica	5	populus_peu07670, populus_peu07671, populus_peu21716 ... populus_peu21717, populus_peu21718
Solanaceae	Lycium barbarum	2	gene-LOC132621672, gene-LOC132642638
Solanaceae	Solanum chilense	2	SOLCI000010300, SOLCI003486200
Solanaceae	Solanum pennellii	2	gene-LOC107010971, gene-LOC107018940
Tamaricaceae	Reaumuria soongarica	5	STRG.22714_chr10_-, STRG.2692_chr02_+, STRG.5022_chr03_- ... gene_14353, gene_335
Tamaricaceae	Tamarix chinensis	4	TC01G4387, TC03G1804, TC04G1016, TC11G0218
Zosteraceae	Zostera marina	4	Zosma02g09890.v3.1, Zosma02g09920.v3.1, Zosma04g02280.v3.1 ... Zosma05g08190.v3.1