Basic Information
Locus ID:
Lb1G00554
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Jacalin-like lectin domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 100816626 | 100817732 | - | Lb1G00554 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.70 | 29,503.94 Da | 30.99 | 88.54 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09612 | Jacalin | 133 | 257 | 6.28735E-29 | IPR033734 |
| CDD | cd09612 | Jacalin | 133 | 257 | 6.28735E-29 | IPR033734 |
| Pfam | PF01419 | Jacalin-like lectin domain | 129 | 257 | 1.1E-21 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 129 | 257 | 1.1E-21 | IPR001229 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 10 | 40 | 8.37E-6 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 112 | 256 | 6.67E-33 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 10 | 40 | 8.37E-6 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 112 | 256 | 6.67E-33 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 6 | 43 | 4.7E-7 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 98 | 257 | 3.2E-38 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 6 | 43 | 4.7E-7 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 98 | 257 | 3.2E-38 | IPR036404 |
| SMART | SM00915 | Jacalin_2 | 123 | 258 | 5.9E-21 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 123 | 258 | 5.9E-21 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 1 | 41 | 12.115869 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 112 | 258 | 36.70813 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 1 | 41 | 12.115869 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 112 | 258 | 36.70813 | IPR001229 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19715.2 | Mannose-binding lectin superfamily protein. | 0 |
| RefSeq | XP_043713347.1 | jacalin-related lectin 3 [Telopea speciosissima] | 0 |
| F4HQX1 | Jacalin-related lectin 3 OS=Arabidopsis thaliana OX=3702 GN=JAL3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6A4L936 | Jacalin-related lectin 3 (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_11094 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology