Basic Information
Locus ID:
Lb1G00549
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Jacalin-like lectin domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 100654967 | 100657217 | - | Lb1G00549 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.19 | 46,425.63 Da | 30.29 | 74.59 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09612 | Jacalin | 44 | 174 | 7.73011E-45 | IPR033734 |
| CDD | cd09612 | Jacalin | 257 | 390 | 1.11255E-33 | IPR033734 |
| CDD | cd09612 | Jacalin | 44 | 174 | 7.73011E-45 | IPR033734 |
| CDD | cd09612 | Jacalin | 257 | 390 | 1.11255E-33 | IPR033734 |
| Pfam | PF01419 | Jacalin-like lectin domain | 257 | 390 | 3.8E-23 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 44 | 174 | 3.6E-33 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 257 | 390 | 3.8E-23 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 44 | 174 | 3.6E-33 | IPR001229 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 247 | 389 | 1.96E-35 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 247 | 389 | 1.96E-35 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 33 | 173 | 4.45E-42 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 33 | 173 | 4.45E-42 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 24 | 174 | 3.9E-51 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 233 | 390 | 9.8E-43 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 233 | 390 | 9.8E-43 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 24 | 174 | 3.9E-51 | IPR036404 |
| SMART | SM00915 | Jacalin_2 | 44 | 175 | 7.1E-38 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 257 | 391 | 1.9E-26 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 44 | 175 | 7.1E-38 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 257 | 391 | 1.9E-26 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 246 | 391 | 39.671955 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 33 | 175 | 46.406223 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 33 | 175 | 46.406223 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 246 | 391 | 39.671955 | IPR001229 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19715.1 | Mannose-binding lectin superfamily protein. | 0 |
| RefSeq | XP_040969729.1 | LOW QUALITY PROTEIN: jacalin-related lectin 3 [Gossypium hirsutum] | 0 |
| F4HQX1 | Jacalin-related lectin 3 OS=Arabidopsis thaliana OX=3702 GN=JAL3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9R622 | Jacalin-related lectin 3-like OS=Spinacia oleracea OX=3562 GN=SOVF_109100 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology