halophFGD

Basic Information

Locus ID: Lb1G00385

Species & Taxonomic ID: Limonium bicolor & 293754

Genome Assembly: GCA_023374045.1

Description: 2-oxoisovalerate dehydrogenase subunit alpha

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr01	67506398	67509877	+	Lb1G00385

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.80	53,461.02 Da	40.22	85.37	-0.32

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd02000	TPP_E1_PDC_ADC_BCADC	136	428	5.99153E-146	-
CDD	cd02000	TPP_E1_PDC_ADC_BCADC	136	428	5.99153E-146	-
Pfam	PF00676	Dehydrogenase E1 component	139	435	3.4E-95	IPR001017
Pfam	PF00676	Dehydrogenase E1 component	139	435	3.4E-95	IPR001017
SUPERFAMILY	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)	124	470	5.0E-104	IPR029061
SUPERFAMILY	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)	124	470	5.0E-104	IPR029061
Gene3D	G3DSA:3.40.50.970	-	80	473	6.0E-138	-
Gene3D	G3DSA:3.40.50.970	-	80	473	6.0E-138	-

Gene Ontology

Molecular Function:

GO:0016624 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor)

KEGG Pathway

KO Term:

K00166 (2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4])

Pathway:

ko00280 (Valine, leucine and isoleucine degradation) map00280 (Valine, leucine and isoleucine degradation) ko00640 (Propanoate metabolism) map00640 (Propanoate metabolism) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites)

Module:

M00036 (Leucine degradation, leucine => acetoacetate + acetyl-CoA)

Reaction:

Best hit

Source	Best Hit ID	Description
TAIR	AT5G09300.2	Thiamin diphosphate-binding fold (THDP-binding) superfamily protein.
RefSeq	XP_021713880.1	2-oxoisovalerate dehydrogenase subunit alpha 2, mitochondrial-like [Chenopodium quinoa]
Swiss-Prot	Q9LPL5	2-oxoisovalerate dehydrogenase subunit alpha 1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g21400 PE=2 SV=1
TrEMBL	A0A0K9R7Q4	E1_dh domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_102010 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg12031, jg39670
Aizoaceae	Mesembryanthemum crystallinum	4	gene_1049, gene_1050, gene_25247, gene_25248
Amaranthaceae	Atriplex hortensis	2	Ah024221, Ah027113
Amaranthaceae	Beta vulgaris	2	BVRB_1g010630, BVRB_6g132750
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg13443, Sbi_jg28271, Sbi_jg51336, Sbi_jg52424
Amaranthaceae	Salicornia europaea	2	Seu_jg7185, Seu_jg9426
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00013427, GOSA_00020145
Amaranthaceae	Suaeda glauca	3	Sgl10450, Sgl15705, Sgl33760
Amaranthaceae	Chenopodium album	5	gene:ENSEOMG00000000394, gene:ENSEOMG00000002528 ... gene:ENSEOMG00000016055, gene:ENSEOMG00000028588, gene:ENSEOMG00000046225
Amaranthaceae	Chenopodium quinoa	3	CQ.Regalona.r1.1AG0013520, CQ.Regalona.r1.1BG0012640 ... CQ.Regalona.r1.6AG0022190
Anacardiaceae	Pistacia vera	2	pistato.v30038720, pistato.v30201350
Apiaceae	Apium graveolens	2	Ag3G01575, Ag7G02190
Arecaceae	Cocos nucifera	1	scaffold011718G000020
Arecaceae	Phoenix dactylifera	1	gene-LOC103720523
Asparagaceae	Asparagus officinalis	1	AsparagusV1_09.250.V1.1
Asteraceae	Flaveria trinervia	4	Ftri11G29069, Ftri12G03333, Ftri12G16755, Ftri16G12838
Brassicaceae	Arabidopsis thaliana	2	AT1G21400.1, AT5G09300.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10007543m.g.v1.0, Thhalv10013452m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp1g18950.v2.2, Sp6g34020.v2.2
Brassicaceae	Brassica nigra	3	BniB03g009170.2N, BniB04g036010.2N, BniB08g004020.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq03G1899, Ceq06G1714, Ceq06G1909
Casuarinaceae	Casuarina glauca	3	Cgl03G2046, Cgl06G1776, Cgl06G2004
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno07g08810
Dunaliellaceae	Dunaliella salina	1	Dusal.0451s00001.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate01g13100, gene.Thate06g09680
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-12281
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG02.889, evm.TU.LG06.795
Plantaginaceae	Plantago ovata	2	Pov_00014211, Pov_00023064
Plumbaginaceae	Limonium bicolor	3	Lb1G00385, Lb1G07224, Lb7G34802
Poaceae	Echinochloa crus-galli	3	AH05.366, BH05.423, CH05.485
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_5AG0384000, gene-QOZ80_5BG0430850
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.5HG0453670.1
Poaceae	Lolium multiflorum	3	gene-QYE76_018697, gene-QYE76_018698, gene-QYE76_071976
Poaceae	Oryza coarctata	1	Oco24G002740
Poaceae	Oryza sativa	1	LOC_Os12g08260.2
Poaceae	Paspalum vaginatum	1	gene-BS78_08G054000
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0703355
Poaceae	Sporobolus alterniflorus	3	Chr04G023530, Chr06G025360, Chr27G002860
Poaceae	Thinopyrum elongatum	1	Tel5E01G217500
Poaceae	Triticum dicoccoides	2	gene_TRIDC4BG011010, gene_TRIDC5AG018220
Poaceae	Triticum aestivum	4	TraesCS4B02G071500.1, TraesCS5A02G120000.3 ... TraesCS5B02G121400.3, TraesCS5D02G126700.1
Poaceae	Zea mays	1	Zm00001eb409040_P006
Poaceae	Zoysia japonica	2	nbis-gene-25493, nbis-gene-46230
Poaceae	Zoysia macrostachya	2	Zma_g24847, Zma_g25581
Portulacaceae	Portulaca oleracea	5	evm.TU.LG03.2426, evm.TU.LG04.1525, evm.TU.LG10.1430 ... evm.TU.LG17.1472, evm.TU.LG19.413
Posidoniaceae	Posidonia oceanica	3	gene.Posoc05g11060, gene.Posoc05g11070, gene.Posoc05g11100
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_3_RagTag.862, evm.TU.Scaffold_7_RagTag.1168
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-1052, nbisL1-mrna-18671, nbisL1-mrna-968
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-11642, nbisL1-mrna-14612
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-13154, nbisL1-mrna-6528
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000002l.392, evm.TU.utg000019l.677
Rhizophoraceae	Kandelia obovata	2	Maker00011674, Maker00012748
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-5142, nbisL1-mrna-8908
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-18381, nbisL1-mrna-19690
Salicaceae	Populus euphratica	5	populus_peu13663, populus_peu14810, populus_peu14815 ... populus_peu32489, populus_peu32490
Solanaceae	Lycium barbarum	5	gene-LOC132602416, gene-LOC132612561, gene-LOC132627204 ... gene-LOC132639976, gene-LOC132641729
Solanaceae	Solanum chilense	5	SOLCI000220100, SOLCI002586800, SOLCI004458100 ... SOLCI004637000, SOLCI005687900
Solanaceae	Solanum pennellii	4	gene-LOC107018340, gene-LOC107020571, gene-LOC107021536 ... gene-LOC107022766
Tamaricaceae	Reaumuria soongarica	2	gene_11070, gene_879
Tamaricaceae	Tamarix chinensis	2	TC03G2752, TC04G0380