halophFGD

Basic Information

Locus ID: Lb1G00201

Species & Taxonomic ID: Limonium bicolor & 293754

Genome Assembly: GCA_023374045.1

Description: cysteine-rich RLK (RECEPTOR-like protein kinase) 8

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr01	37076547	37079381	-	Lb1G00201

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.06	75,285.57 Da	39.40	75.79	-0.32

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF14223	gag-polypeptide of LTR copia-type	168	287	6.6E-15	-
Pfam	PF14223	gag-polypeptide of LTR copia-type	168	287	6.6E-15	-
SUPERFAMILY	SSF53098	Ribonuclease H-like	436	590	1.1E-28	IPR012337
SUPERFAMILY	SSF53098	Ribonuclease H-like	436	590	1.1E-28	IPR012337
Gene3D	G3DSA:3.30.420.10	-	425	581	1.8E-25	IPR036397
Gene3D	G3DSA:3.30.420.10	-	425	581	1.8E-25	IPR036397
ProSiteProfiles	PS50994	Integrase catalytic domain profile.	412	581	18.694326	IPR001584
ProSiteProfiles	PS50994	Integrase catalytic domain profile.	412	581	18.694326	IPR001584
MobiDBLite	mobidb-lite	consensus disorder prediction	303	346	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	17	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	17	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	22	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	303	346	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	22	-	-

Gene Ontology

Biological Process:

GO:0015074 (DNA integration)

Molecular Function:

GO:0003676 (nucleic acid binding)

Best hit

Source	Best Hit ID	Description
RefSeq	XP_019447442.1	PREDICTED: uncharacterized protein LOC109348071 [Lupinus angustifolius]
Swiss-Prot	Q94HW2	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1
TrEMBL	A0A2N9HF11	Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS38654 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Salicornia bigelovii	11	Sbi_jg22532, Sbi_jg22994, Sbi_jg35991, Sbi_jg47084 ... Sbi_jg5628, Sbi_jg58328, Sbi_jg60530, Sbi_jg61478, Sbi_jg63342, Sbi_jg8665, Sbi_jg9642
Amaranthaceae	Salicornia europaea	3	Seu_jg13583, Seu_jg220, Seu_jg24372
Amaranthaceae	Suaeda glauca	22	Sgl20258, Sgl21425, Sgl22765, Sgl23137, Sgl26539, Sgl26751 ... Sgl28247, Sgl28348, Sgl34681, Sgl35523, Sgl40897, Sgl43954, Sgl43993, Sgl48719, Sgl48762, Sgl51791, Sgl52022, Sgl53267, Sgl54094, Sgl55419, Sgl57325, Sgl58530
Amaranthaceae	Chenopodium album	2	gene:ENSEOMG00000004351, gene:ENSEOMG00000049261
Anacardiaceae	Pistacia vera	1	pistato.v30096180
Asteraceae	Flaveria trinervia	1	Ftri3G03871
Brassicaceae	Schrenkiella parvula	1	Sp7g03155.v2.2
Brassicaceae	Brassica nigra	13	BniB01g008680.2N, BniB01g011550.2N, BniB01g033040.2N ... BniB02g033300.2N, BniB04g047250.2N, BniB04g052240.2N, BniB05g063000.2N, BniB06g045160.2N, BniB07g001750.2N, BniB07g029480.2N, BniB07g034250.2N, BniB07g043950.2N, BniB08g017720.2N
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno02g08420, gene.Cymno02g12120, gene.Cymno07g04820
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate01g15590, gene.Thate06g10480
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-7277
Plantaginaceae	Plantago ovata	7	Pov_00001112, Pov_00012497, Pov_00029344, Pov_00029907 ... Pov_00031130, Pov_00035796, Pov_00041323
Plumbaginaceae	Limonium bicolor	2	Lb1G00201, Lb1G06209
Poaceae	Echinochloa crus-galli	3	CH01.4204, CH02.4285, CH02.754
Poaceae	Lolium multiflorum	23	gene-QYE76_000053, gene-QYE76_005675, gene-QYE76_009235 ... gene-QYE76_009560, gene-QYE76_012081, gene-QYE76_012926, gene-QYE76_013696, gene-QYE76_016216, gene-QYE76_022787, gene-QYE76_024878, gene-QYE76_025602, gene-QYE76_025751, gene-QYE76_034510, gene-QYE76_038282, gene-QYE76_053921, gene-QYE76_054335, gene-QYE76_055424, gene-QYE76_057980, gene-QYE76_059298, gene-QYE76_062503, gene-QYE76_064015, gene-QYE76_066038, gene-QYE76_071481
Poaceae	Oryza coarctata	7	Oco02G011690, Oco02G031780, Oco03G007110, Oco03G009910 ... Oco09G006540, Oco16G006370, Oco22G008980
Poaceae	Sporobolus alterniflorus	24	Chr01G024190, Chr01G024200, Chr05G013180, Chr05G013190 ... Chr07G010460, Chr07G013140, Chr08G012100, Chr08G012270, Chr09G005120, Chr12G015710, Chr13G016330, Chr15G017680, Chr16G013230, Chr17G009520, Chr17G009530, Chr18G003390, Chr21G013910, Chr24G013840, Chr25G010030, Chr25G010040, Chr25G014830, Chr25G014840, Chr29G009710, Chr30G014440
Poaceae	Zoysia japonica	7	nbis-gene-15370, nbis-gene-31910, nbis-gene-43348 ... nbis-gene-5120, nbis-gene-56072, nbis-gene-58384, nbis-gene-58844
Posidoniaceae	Posidonia oceanica	1	gene.Posoc01g29300
Solanaceae	Solanum pennellii	1	gene-LOC114075978
Tamaricaceae	Reaumuria soongarica	3	MSTRG.20127_chr11_-, STRG.30077_chr10_+, gene_8045