Basic Information
Locus ID:
Lb1G00153
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 28550827 | 28552529 | + | Lb1G00153 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.73 | 18,890.36 Da | 44.52 | 75.09 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 3 | 147 | 1.89042E-48 | IPR000608 |
| CDD | cd00195 | UBCc | 3 | 147 | 1.89042E-48 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 5 | 146 | 1.2E-34 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 5 | 146 | 1.2E-34 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 2 | 154 | 4.09E-46 | IPR016135 |
| SUPERFAMILY | SSF54495 | UBC-like | 2 | 154 | 4.09E-46 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 1 | 159 | 8.5E-49 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 1 | 159 | 8.5E-49 | IPR016135 |
| SMART | SM00212 | ubc_7 | 4 | 152 | 8.1E-40 | - |
| SMART | SM00212 | ubc_7 | 4 | 152 | 8.1E-40 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 1 | 152 | 42.564816 | IPR000608 |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 1 | 152 | 42.564816 | IPR000608 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G08690.1 | ubiquitin-conjugating enzyme 11. | 0 |
| RefSeq | XP_020520371.1 | ubiquitin-conjugating enzyme E2-17 kDa [Amborella trichopoda] | 0 |
| P35134 | Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis thaliana OX=3702 GN=UBC11 PE=1 SV=2 | 0 | |
| TrEMBL | C0PPT0 | UBC core domain-containing protein OS=Picea sitchensis OX=3332 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
No orthogroup found for Lb1G00153.