Basic Information
Locus ID:
Lb1G00152
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Encoded by
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 28508991 | 28525375 | + | Lb1G00152 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.74 | 77,149.12 Da | 37.51 | 83.86 | -0.85 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 538 | 652 | 5.39156E-41 | IPR000608 |
| CDD | cd00195 | UBCc | 538 | 652 | 5.39156E-41 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 532 | 651 | 1.4E-37 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 532 | 651 | 1.4E-37 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 532 | 657 | 1.03E-42 | IPR016135 |
| SUPERFAMILY | SSF54495 | UBC-like | 532 | 657 | 1.03E-42 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 514 | 658 | 1.5E-47 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 514 | 658 | 1.5E-47 | IPR016135 |
| SMART | SM00212 | ubc_7 | 511 | 657 | 4.2E-44 | - |
| SMART | SM00212 | ubc_7 | 511 | 657 | 4.2E-44 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 512 | 657 | 38.420734 | IPR000608 |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 512 | 657 | 38.420734 | IPR000608 |
| Coils | Coil | Coil | 300 | 320 | - | - |
| Coils | Coil | Coil | 300 | 320 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G56150.1 | ubiquitin-conjugating enzyme 30. | 0 |
| RefSeq | XP_010935118.1 | ubiquitin-conjugating enzyme E2-17 kDa isoform X2 [Elaeis guineensis] | 0 |
| P46595 | Ubiquitin-conjugating enzyme E2 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=ubc4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8J5YNM5 | UBC core domain-containing protein OS=Gossypium anomalum OX=47600 GN=CXB51_011058 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||