Basic Information
Locus ID:
Lb1G00151
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 28449573 | 28453671 | + | Lb1G00151 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.29 | 28,060.62 Da | 43.87 | 69.00 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 34 | 85 | 8.03706E-24 | - |
| CDD | cd16745 | RING-HC_AtRMA_like | 34 | 85 | 8.03706E-24 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 36 | 84 | 2.6E-8 | IPR018957 |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 36 | 84 | 2.6E-8 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 33 | 97 | 1.32E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 33 | 97 | 1.32E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 31 | 101 | 4.5E-17 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 31 | 101 | 4.5E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 36 | 84 | 9.3E-9 | IPR001841 |
| SMART | SM00184 | ring_2 | 36 | 84 | 9.3E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 36 | 85 | 12.267982 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 36 | 85 | 12.267982 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 51 | 60 | - | IPR017907 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 51 | 60 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 100 | 126 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 100 | 126 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G27470.1 | RING membrane-anchor 3. Encodes a RING finger E3 ubiquitin ligase. | 0 |
| RefSeq | XP_020219804.1 | E3 ubiquitin-protein ligase RMA1H1 [Cajanus cajan] | 0 |
| Q8GUK7 | E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana OX=3702 GN=RMA3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A151UAD6 | RING-type E3 ubiquitin transferase OS=Cajanus cajan OX=3821 GN=KK1_020506 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology