Basic Information
Locus ID:
Lb1G00114
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
F-box LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 26064974 | 26088905 | - | Lb1G00114 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.09 | 67,882.41 Da | 34.28 | 107.42 | 0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13516 | Leucine Rich repeat | 462 | 484 | 0.0097 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 306 | 329 | 0.29 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 177 | 200 | 0.098 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 151 | 172 | 0.0098 | IPR001611 |
| Pfam | PF18511 | F-box | 9 | 48 | 2.2E-7 | IPR041567 |
| Pfam | PF13516 | Leucine Rich repeat | 151 | 172 | 0.0098 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 541 | 563 | 1.5 | IPR001611 |
| Pfam | PF18511 | F-box | 9 | 48 | 2.2E-7 | IPR041567 |
| Pfam | PF13516 | Leucine Rich repeat | 177 | 200 | 0.098 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 541 | 563 | 1.5 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 306 | 329 | 0.29 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 462 | 484 | 0.0097 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 490 | 602 | 5.76E-11 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 280 | 516 | 3.4E-39 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 280 | 516 | 3.4E-39 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 9 | 41 | 3.01E-5 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 113 | 349 | 5.89E-39 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 490 | 602 | 5.76E-11 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 113 | 349 | 5.89E-39 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 9 | 41 | 3.01E-5 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 347 | 504 | 4.3E-35 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 111 | 164 | 4.4E-12 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 505 | 623 | 3.7E-14 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 4 | 47 | 5.7E-11 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 347 | 504 | 4.3E-35 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 165 | 346 | 3.2E-44 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 505 | 623 | 3.7E-14 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 165 | 346 | 3.2E-44 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 111 | 164 | 4.4E-12 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 4 | 47 | 5.7E-11 | - |
| SMART | SM00367 | LRR_CC_2 | 358 | 383 | 0.17 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 513 | 540 | 610.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 230 | 254 | 29.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 541 | 566 | 3.9E-5 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 280 | 305 | 1.2 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 126 | 151 | 0.068 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 436 | 461 | 4.4E-4 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 152 | 176 | 0.47 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 255 | 279 | 140.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 306 | 331 | 0.2 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 204 | 229 | 17.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 567 | 592 | 51.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 384 | 409 | 1.6E-4 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 332 | 357 | 8.7 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 410 | 435 | 3.4E-4 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 177 | 202 | 9.6E-7 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 462 | 486 | 6.4 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 230 | 254 | 29.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 436 | 461 | 4.4E-4 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 126 | 151 | 0.068 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 462 | 486 | 6.4 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 280 | 305 | 1.2 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 541 | 566 | 3.9E-5 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 513 | 540 | 610.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 358 | 383 | 0.17 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 567 | 592 | 51.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 204 | 229 | 17.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 410 | 435 | 3.4E-4 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 255 | 279 | 140.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 177 | 202 | 9.6E-7 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 332 | 357 | 8.7 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 306 | 331 | 0.2 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 384 | 409 | 1.6E-4 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 152 | 176 | 0.47 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G15475.1 | F-box/RNI-like superfamily protein. | 0 |
| RefSeq | XP_034686405.1 | F-box/LRR-repeat protein 4 isoform X1 [Vitis riparia] | 0 |
| Q9C5D2 | F-box/LRR-repeat protein 4 OS=Arabidopsis thaliana OX=3702 GN=FBL4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5B6YUZ7 | F-box domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_005081 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg12493 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4170 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30237970, pistato.v30238000 |
| Apiaceae | Apium graveolens | 1 | Ag1G01919 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G007540 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103723004 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.1400.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G22647 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G15475.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024700m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g13700.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g073970.2N |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1354 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g00110 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g00400 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.1413 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00026246, Pov_00026249, Pov_00034018 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G00114 |
| Poaceae | Echinochloa crus-galli | 5 | AH02.2463, BH04.2128, CH02.1614, CH03.2032, CH04.2458 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0690790, gene-QOZ80_9BG0717100 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0365590.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_065994 |
| Poaceae | Oryza coarctata | 2 | Oco21G008990, Oco22G010240 |
| Poaceae | Oryza sativa | 3 | LOC_Os08g30980.1, LOC_Os10g05800.2, LOC_Os11g42160.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G225300 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0103366 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr07G014250, Chr31G008270 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G244800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG020800, gene_TRIDC4BG024690 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G142500.3, TraesCS4D02G148000.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb115300_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-37587, nbis-gene-37589, nbis-gene-58391 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g18228, Zma_g18230 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.2060, evm.TU.LG14.358 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g34700 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.507 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-1455 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17342 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6229 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.912 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012570 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6308 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-2065 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132642061 |
| Solanaceae | Solanum chilense | 1 | SOLCI001496100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107021070 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_9380 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1503 |
| Zosteraceae | Zostera marina | 1 | Zosma04g26890.v3.1 |