halophFGD

Basic Information

Locus ID: Lb1G00078

Species & Taxonomic ID: Limonium bicolor & 293754

Genome Assembly: GCA_023374045.1

Description: BEST Arabidopsis thaliana protein match is

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr01	20635715	20644460	-	Lb1G00078

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.47	115,010.68 Da	52.40	61.58	-1.05

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
SUPERFAMILY	SSF63748	Tudor/PWWP/MBT	782	823	2.11E-7	-
SUPERFAMILY	SSF48371	ARM repeat	66	256	1.56E-8	IPR016024
SUPERFAMILY	SSF63748	Tudor/PWWP/MBT	782	823	2.11E-7	-
SUPERFAMILY	SSF48371	ARM repeat	66	256	1.56E-8	IPR016024
Gene3D	G3DSA:2.30.30.140	-	775	830	1.1E-10	-
Gene3D	G3DSA:2.30.30.140	-	775	830	1.1E-10	-
MobiDBLite	mobidb-lite	consensus disorder prediction	634	697	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	263	780	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	859	877	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	709	731	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	266	298	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	598	630	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	912	929	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	946	979	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	308	327	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	328	537	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	836	1058	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	885	901	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	946	979	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	263	780	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	885	901	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	709	731	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	634	697	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	859	877	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	266	298	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	930	945	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	836	1058	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	912	929	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	930	945	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	308	327	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	328	537	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	598	630	-	-
Coils	Coil	Coil	26	46	-	-
Coils	Coil	Coil	26	46	-	-

Best hit

Source	Best Hit ID	Description
TAIR	AT4G31880.2
RefSeq	XP_048495138.1	sister chromatid cohesion protein PDS5 homolog C isoform X3 [Beta vulgaris subsp. vulgaris]
Swiss-Prot	Q8GUP3	Sister chromatid cohesion protein PDS5 homolog C OS=Arabidopsis thaliana OX=3702 GN=PDS5C PE=1 SV=1
TrEMBL	A0A7C8YZH4	Sister chromatid cohesion PDS5-like protein (Fragment) OS=Opuntia streptacantha OX=393608 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg13469, jg18308, jg24038, jg27134, jg36564
Aizoaceae	Mesembryanthemum crystallinum	2	gene_26270, gene_8191
Amaranthaceae	Atriplex hortensis	2	Ah009214, Ah034859
Amaranthaceae	Beta vulgaris	2	BVRB_2g031360, BVRB_9g223100
Amaranthaceae	Salicornia bigelovii	7	Sbi_jg11690, Sbi_jg21058, Sbi_jg22739, Sbi_jg42119 ... Sbi_jg42120, Sbi_jg44693, Sbi_jg46711
Amaranthaceae	Salicornia europaea	3	Seu_jg16614, Seu_jg20938, Seu_jg27402
Amaranthaceae	Suaeda aralocaspica	5	GOSA_00005084, GOSA_00018267, GOSA_00018269, GOSA_00018270 ... GOSA_00018272
Amaranthaceae	Suaeda glauca	5	Sgl55357, Sgl60618, Sgl60704, Sgl62411, Sgl66960
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000017363, gene:ENSEOMG00000019114 ... gene:ENSEOMG00000023791, gene:ENSEOMG00000024921, gene:ENSEOMG00000039337, gene:ENSEOMG00000051628
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.1BG0022000, CQ.Regalona.r1.2AG0023810 ... CQ.Regalona.r1.7BG0000100, CQ.Regalona.r1.9AG0024320
Anacardiaceae	Pistacia vera	2	pistato.v30129990, pistato.v30250860
Apiaceae	Apium graveolens	7	Ag11G04493, Ag4G00082, Ag5G00176, Ag6G02420, Ag7G01896 ... Ag8G02082, Ag9G01196
Arecaceae	Cocos nucifera	2	COCNU_01G005200, COCNU_11G011990
Arecaceae	Phoenix dactylifera	3	gene-LOC103710418, gene-LOC103714235, gene-LOC113462467
Asparagaceae	Asparagus officinalis	1	AsparagusV1_08.1855.V1.1
Asteraceae	Flaveria trinervia	5	Ftri13G09438, Ftri14G32204, Ftri18G28033, Ftri1G09744 ... Ftri7G06025
Brassicaceae	Arabidopsis thaliana	3	AT1G15940.1, AT1G80810.2, AT4G31880.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10006733m.g.v1.0, Thhalv10018162m.g.v1.0 ... Thhalv10024366m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp1g14250.v2.2, Sp5g22150.v2.2, Sp5g34950.v2.2 ... Sp7g29700.v2.2
Brassicaceae	Brassica nigra	7	BniB02g085620.2N, BniB03g006560.2N, BniB03g026620.2N ... BniB05g006130.2N, BniB06g041310.2N, BniB06g051250.2N, BniB06g068160.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq02G0403, Ceq04G2420
Casuarinaceae	Casuarina glauca	2	Cgl02G0428, Cgl04G2624
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno02g05230, gene.Cymno06g07760
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate05g06230, gene.Thate05g06250, gene.Thate07g07700
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-320
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG01.805, evm.TU.LG07.1519
Plantaginaceae	Plantago ovata	9	Pov_00004765, Pov_00010802, Pov_00010907, Pov_00011899 ... Pov_00019396, Pov_00020147, Pov_00034210, Pov_00034716, Pov_00041611
Plumbaginaceae	Limonium bicolor	4	Lb1G00078, Lb3G17889, Lb3G18393, Lb4G22655
Poaceae	Echinochloa crus-galli	5	AH07.2581, AH09.1472, BH07.2393, CH07.2467, CH09.1764
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_2AG0137270, gene-QOZ80_2BG0192870 ... gene-QOZ80_4AG0311680, gene-QOZ80_4BG0342980
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.2HG0179330.1, HORVU.MOREX.r3.6HG0593920.1
Poaceae	Lolium multiflorum	1	gene-QYE76_023570
Poaceae	Oryza coarctata	5	Oco03G015180, Oco04G015710, Oco07G009910, Oco08G003150 ... Oco08G009690
Poaceae	Oryza sativa	2	LOC_Os02g39920.1, LOC_Os04g42320.1
Poaceae	Paspalum vaginatum	2	gene-BS78_04G194200, gene-BS78_06G150800
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0203991, Pt_Chr0203993, Pt_Chr0204573, Pt_Chr0204630 ... Pt_Chr0302219
Poaceae	Sporobolus alterniflorus	13	Chr03G008080, Chr06G008440, Chr09G026030, Chr13G007710 ... Chr15G009960, Chr16G008630, Chr16G011930, Chr17G011050, Chr17G011060, Chr23G009470, Chr26G010260, Chr29G007660, Chr29G007680
Poaceae	Thinopyrum elongatum	2	Tel2E01G623500, Tel6E01G426300
Poaceae	Triticum dicoccoides	4	gene_TRIDC2AG051660, gene_TRIDC2BG055000 ... gene_TRIDC6AG034150, gene_TRIDC6BG040720
Poaceae	Triticum aestivum	7	TraesCS2A02G356300.2, TraesCS2A02G517400.1 ... TraesCS2B02G375600.1, TraesCS2D02G355200.2, TraesCS6A02G231400.3, TraesCS6B02G249900.1, TraesCS6D02G203700.3
Poaceae	Zea mays	7	Zm00001eb078170_P001, Zm00001eb184560_P003 ... Zm00001eb203440_P001, Zm00001eb213590_P001, Zm00001eb246990_P002, Zm00001eb422240_P001, Zm00001eb425970_P001
Poaceae	Zoysia japonica	2	nbis-gene-18548, nbis-gene-29669
Poaceae	Zoysia macrostachya	3	Zma_g13882, Zma_g16658, Zma_g21032
Portulacaceae	Portulaca oleracea	6	evm.TU.LG07.1272, evm.TU.LG07.1843, evm.TU.LG07.602 ... evm.TU.LG15.1321, evm.TU.LG15.341, evm.TU.LG22.728
Posidoniaceae	Posidonia oceanica	3	gene.Posoc01g08140, gene.Posoc02g24140, gene.Posoc03g12680
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_10_RagTag.897, evm.TU.Scaffold_11_RagTag.618 ... evm.TU.Scaffold_4_RagTag.1443
Rhizophoraceae	Carallia pectinifolia	5	nbisL1-mrna-13577, nbisL1-mrna-19018, nbisL1-mrna-26284 ... nbisL1-mrna-6706, nbisL1-mrna-9266
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-4093, nbisL1-mrna-975
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-9149
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000004l.204, evm.TU.utg000005l.54 ... evm.TU.utg000008l.781
Rhizophoraceae	Kandelia obovata	3	Maker00001451, Maker00004260, Maker00008799
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-1006, nbisL1-mrna-2268, nbisL1-mrna-3738
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-7812, nbisL1-mrna-9712
Salicaceae	Populus euphratica	5	populus_peu04093, populus_peu04697, populus_peu05608 ... populus_peu12994, populus_peu34926
Solanaceae	Lycium barbarum	4	gene-LOC132598943, gene-LOC132628439, gene-LOC132633022 ... gene-LOC132643786
Solanaceae	Solanum chilense	5	SOLCI001041300, SOLCI001172100, SOLCI002190800 ... SOLCI006736600, SOLCI006785600
Solanaceae	Solanum pennellii	7	gene-LOC107012099, gene-LOC107012321, gene-LOC107013637 ... gene-LOC107015433, gene-LOC107021116, gene-LOC107023113, gene-LOC114076028
Tamaricaceae	Reaumuria soongarica	2	STRG.1041_chr01_+, gene_6396
Tamaricaceae	Tamarix chinensis	2	TC01G1045, TC10G2409
Zosteraceae	Zostera marina	5	Zosma01g04220.v3.1, Zosma03g06350.v3.1, Zosma05g32680.v3.1 ... Zosma06g14340.v3.1, Zosma154g00110.v3.1