Basic Information
Locus ID:
Lb1G00058
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
eukaryotic translation initiation factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 16960346 | 16961013 | + | Lb1G00058 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.91 | 11,490.02 Da | 27.21 | 97.38 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01287 | Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold | 47 | 101 | 2.2E-10 | IPR020189 |
| Pfam | PF01287 | Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold | 47 | 101 | 2.2E-10 | IPR020189 |
| SUPERFAMILY | SSF50104 | Translation proteins SH3-like domain | 1 | 55 | 4.27E-9 | IPR008991 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 48 | 103 | 9.71E-12 | IPR012340 |
| SUPERFAMILY | SSF50104 | Translation proteins SH3-like domain | 1 | 55 | 4.27E-9 | IPR008991 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 48 | 103 | 9.71E-12 | IPR012340 |
| Gene3D | G3DSA:2.40.50.140 | - | 48 | 106 | 8.9E-15 | - |
| Gene3D | G3DSA:2.30.30.30 | - | 1 | 46 | 3.4E-18 | IPR014722 |
| Gene3D | G3DSA:2.40.50.140 | - | 48 | 106 | 8.9E-15 | - |
| Gene3D | G3DSA:2.30.30.30 | - | 1 | 46 | 3.4E-18 | IPR014722 |
| SMART | SM01376 | eIF_5a_2 | 47 | 101 | 5.3E-13 | IPR020189 |
| SMART | SM01376 | eIF_5a_2 | 47 | 101 | 5.3E-13 | IPR020189 |
| PIRSF | PIRSF003025 | Transl_init_eIF5A | 1 | 104 | 2.8E-30 | IPR001884 |
| PIRSF | PIRSF003025 | Transl_init_eIF5A | 1 | 104 | 2.8E-30 | IPR001884 |
| ProSitePatterns | PS00302 | Eukaryotic initiation factor 5A hypusine signature. | 9 | 16 | - | IPR019769 |
| ProSitePatterns | PS00302 | Eukaryotic initiation factor 5A hypusine signature. | 9 | 16 | - | IPR019769 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G13950.1 | eukaryotic elongation factor 5A-1. Encodes eukaryotic translation initiation factor 5A (EIF-5A).In mammalian cells it functions as a shuttle protein that translocates mRNA from the nucleus to cytoplasmic ribosomes. Overexpression results in an increase in both primary and secondary xylem formation. In RNAi suppressed lines, xylem formation is reduced. | 0 |
| RefSeq | XP_004981693.1 | eukaryotic translation initiation factor 5A-1/2 [Setaria italica] | 0 |
| Q9SC12 | Eukaryotic translation initiation factor 5A OS=Senecio vernalis OX=93496 GN=EIFSV1 PE=2 SV=1 | 0 | |
| TrEMBL | K4AG37 | Eukaryotic translation initiation factor 5A OS=Setaria italica OX=4555 GN=101768906 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology