Basic Information
Locus ID:
Lb0G38389
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold914 | 37214 | 38335 | + | Lb0G38389 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.77 | 15,555.93 Da | 29.50 | 107.91 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00270 | DEAD/DEAH box helicase | 2 | 91 | 1.1E-25 | IPR011545 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 2 | 91 | 1.1E-25 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 2 | 103 | 3.03E-33 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 2 | 103 | 3.03E-33 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1 | 109 | 8.1E-40 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1 | 109 | 8.1E-40 | IPR027417 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 1 | 102 | 19.185696 | IPR014001 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 1 | 102 | 19.185696 | IPR014001 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G14610.4 | - | 0 |
| RefSeq | XP_017258019.1 | PREDICTED: ATP-dependent RNA helicase-like protein DB10 [Daucus carota subsp. sativus] | 0 |
| Q9LYJ9 | DEAD-box ATP-dependent RNA helicase 46 OS=Arabidopsis thaliana OX=3702 GN=RH46 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5K0ZSX4 | Helicase ATP-binding domain-containing protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS12136 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology