Basic Information
Locus ID:
Lb0G38373
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold894 | 32765 | 34452 | + | Lb0G38373 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.10 | 43,527.73 Da | 46.98 | 94.68 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 130 | 326 | 6.3E-34 | IPR000719 |
| Pfam | PF00069 | Protein kinase domain | 130 | 326 | 6.3E-34 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 144 | 363 | 5.53E-51 | IPR011009 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 144 | 363 | 5.53E-51 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 107 | 177 | 1.8E-7 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 178 | 379 | 6.8E-49 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 107 | 177 | 1.8E-7 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 178 | 379 | 6.8E-49 | - |
| SMART | SM00220 | serkin_6 | 21 | 367 | 5.2E-12 | IPR000719 |
| SMART | SM00220 | serkin_6 | 21 | 367 | 5.2E-12 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 21 | 380 | 27.834805 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 21 | 380 | 27.834805 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 219 | 231 | - | IPR008271 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 219 | 231 | - | IPR008271 |
| Coils | Coil | Coil | 10 | 30 | - | - |
| Coils | Coil | Coil | 66 | 93 | - | - |
| Coils | Coil | Coil | 66 | 93 | - | - |
| Coils | Coil | Coil | 10 | 30 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_009340098.2 | LOW QUALITY PROTEIN: U-box domain-containing protein 33 [Pyrus x bretschneideri] | 0 |
| Q8GUH1 | U-box domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=PUB33 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5J4ZRI6 | RING-type E3 ubiquitin transferase OS=Nyssa sinensis OX=561372 GN=F0562_014895 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology