Basic Information
Locus ID:
Lb0G38317
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold84 | 50010 | 51601 | - | Lb0G38317 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.68 | 41,913.71 Da | 32.32 | 78.99 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09612 | Jacalin | 21 | 151 | 2.70101E-38 | IPR033734 |
| CDD | cd09612 | Jacalin | 240 | 374 | 2.6962E-32 | IPR033734 |
| CDD | cd09612 | Jacalin | 240 | 374 | 2.6962E-32 | IPR033734 |
| CDD | cd09612 | Jacalin | 21 | 151 | 2.70101E-38 | IPR033734 |
| Pfam | PF01419 | Jacalin-like lectin domain | 21 | 151 | 9.6E-30 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 240 | 374 | 9.2E-26 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 240 | 374 | 9.2E-26 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 21 | 151 | 9.6E-30 | IPR001229 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 230 | 373 | 6.8E-36 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 10 | 150 | 3.66E-40 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 10 | 150 | 3.66E-40 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 230 | 373 | 6.8E-36 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 3 | 151 | 2.9E-49 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 215 | 374 | 2.0E-43 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 3 | 151 | 2.9E-49 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 215 | 374 | 2.0E-43 | IPR036404 |
| SMART | SM00915 | Jacalin_2 | 21 | 152 | 2.3E-32 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 21 | 152 | 2.3E-32 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 240 | 375 | 6.1E-31 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 240 | 375 | 6.1E-31 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 229 | 375 | 41.913586 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 229 | 375 | 41.913586 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 10 | 152 | 46.42498 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 10 | 152 | 46.42498 | IPR001229 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19715.3 | Mannose-binding lectin superfamily protein. | 0 |
| RefSeq | XP_027333047.1 | jacalin-related lectin 3 [Abrus precatorius] | 0 |
| F4HQX1 | Jacalin-related lectin 3 OS=Arabidopsis thaliana OX=3702 GN=JAL3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8B8JNL5 | jacalin-related lectin 3 OS=Abrus precatorius OX=3816 GN=LOC113847916 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology