Basic Information
Locus ID:
Lb0G38280
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold796 | 7058 | 10953 | + | Lb0G38280 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.29 | 56,060.73 Da | 61.54 | 90.14 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 258 | 306 | 2.72576E-13 | - |
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 258 | 306 | 2.72576E-13 | - |
| Pfam | PF12906 | RING-variant domain | 258 | 305 | 8.2E-10 | IPR011016 |
| Pfam | PF12906 | RING-variant domain | 258 | 305 | 8.2E-10 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 254 | 308 | 1.63E-12 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 254 | 308 | 1.63E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 252 | 309 | 6.5E-14 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 252 | 309 | 6.5E-14 | IPR013083 |
| SMART | SM00744 | ringv_2 | 257 | 306 | 1.3E-17 | IPR011016 |
| SMART | SM00744 | ringv_2 | 257 | 306 | 1.3E-17 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 250 | 312 | 18.160301 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 250 | 312 | 18.160301 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 32 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 32 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021770597.1 | uncharacterized protein LOC110734758 isoform X1 [Chenopodium quinoa] | 0 |
| TrEMBL | A0A1R3HQF4 | Zinc finger, RING-CH-type OS=Corchorus capsularis OX=210143 GN=CCACVL1_17740 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology