Basic Information
Locus ID:
Lb0G38247
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Random slug protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold762 | 21691 | 24759 | + | Lb0G38247 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.27 | 37,007.44 Da | 58.28 | 76.74 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00170 | SEC14 | 107 | 258 | 2.4214E-39 | IPR001251 |
| CDD | cd00170 | SEC14 | 107 | 258 | 2.4214E-39 | IPR001251 |
| Pfam | PF03765 | CRAL/TRIO, N-terminal domain | 59 | 84 | 1.3E-5 | IPR011074 |
| Pfam | PF00650 | CRAL/TRIO domain | 107 | 258 | 1.5E-34 | IPR001251 |
| Pfam | PF00650 | CRAL/TRIO domain | 107 | 258 | 1.5E-34 | IPR001251 |
| Pfam | PF03765 | CRAL/TRIO, N-terminal domain | 59 | 84 | 1.3E-5 | IPR011074 |
| SUPERFAMILY | SSF46938 | CRAL/TRIO N-terminal domain | 39 | 101 | 5.36E-15 | IPR036273 |
| SUPERFAMILY | SSF46938 | CRAL/TRIO N-terminal domain | 39 | 101 | 5.36E-15 | IPR036273 |
| SUPERFAMILY | SSF52087 | CRAL/TRIO domain | 99 | 276 | 2.62E-46 | IPR036865 |
| SUPERFAMILY | SSF52087 | CRAL/TRIO domain | 99 | 276 | 2.62E-46 | IPR036865 |
| Gene3D | G3DSA:3.40.525.10 | - | 3 | 297 | 2.2E-79 | IPR036865 |
| Gene3D | G3DSA:3.40.525.10 | - | 3 | 297 | 2.2E-79 | IPR036865 |
| SMART | SM00516 | sec14_4 | 105 | 260 | 4.2E-43 | IPR001251 |
| SMART | SM01100 | CRAL_TRIO_N_2 | 60 | 85 | 1.1E-6 | IPR011074 |
| SMART | SM00516 | sec14_4 | 105 | 260 | 4.2E-43 | IPR001251 |
| SMART | SM01100 | CRAL_TRIO_N_2 | 60 | 85 | 1.1E-6 | IPR011074 |
| ProSiteProfiles | PS50191 | CRAL-TRIO lipid binding domain profile. | 99 | 263 | 18.601227 | IPR001251 |
| ProSiteProfiles | PS50191 | CRAL-TRIO lipid binding domain profile. | 99 | 263 | 18.601227 | IPR001251 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 16 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 16 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G75170.1 | Sec14p-like phosphatidylinositol transfer family protein. | 0 |
| RefSeq | XP_027092798.1 | phosphatidylinositol transfer protein 3-like [Coffea arabica] | 0 |
| P53860 | Phosphatidylinositol transfer protein PDR16 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=PDR16 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6P6UPQ7 | phosphatidylinositol transfer protein 3-like OS=Coffea arabica OX=13443 GN=LOC113713303 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology