Basic Information
Locus ID:
Lb0G38004
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold508 | 19223 | 21519 | + | Lb0G38004 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.13 | 28,748.85 Da | 49.30 | 59.20 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14599 | Zinc-ribbon | 188 | 246 | 7.3E-26 | IPR039512 |
| Pfam | PF13639 | Ring finger domain | 140 | 183 | 2.3E-8 | IPR001841 |
| Pfam | PF05495 | CHY zinc finger | 5 | 86 | 1.6E-18 | IPR008913 |
| Pfam | PF05495 | CHY zinc finger | 5 | 86 | 1.6E-18 | IPR008913 |
| Pfam | PF13639 | Ring finger domain | 140 | 183 | 2.3E-8 | IPR001841 |
| Pfam | PF14599 | Zinc-ribbon | 188 | 246 | 7.3E-26 | IPR039512 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 3 | 76 | 1.31E-15 | IPR037274 |
| SUPERFAMILY | SSF57850 | RING/U-box | 140 | 188 | 1.68E-9 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 77 | 134 | 1.03E-18 | IPR037275 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 3 | 76 | 1.31E-15 | IPR037274 |
| SUPERFAMILY | SSF57850 | RING/U-box | 140 | 188 | 1.68E-9 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 77 | 134 | 1.03E-18 | IPR037275 |
| Gene3D | G3DSA:2.20.28.10 | - | 212 | 250 | 2.0E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 135 | 185 | 5.1E-11 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 212 | 250 | 2.0E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 135 | 185 | 5.1E-11 | IPR013083 |
| SMART | SM00184 | ring_2 | 141 | 183 | 5.1E-8 | IPR001841 |
| SMART | SM00184 | ring_2 | 141 | 183 | 5.1E-8 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 1 | 74 | 24.546112 | IPR008913 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 1 | 74 | 24.546112 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 76 | 140 | 32.791782 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 141 | 183 | 12.076194 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 141 | 183 | 12.076194 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 76 | 140 | 32.791782 | IPR017921 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25560.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_010541642.1 | PREDICTED: E3 ubiquitin-protein ligase MIEL1-like [Tarenaya hassleriana] | 0 |
| Q5JL96 | Probable E3 ubiquitin-protein ligase RZFP34 OS=Oryza sativa subsp. japonica OX=39947 GN=RZFP34 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5B7AR75 | Putative RING finger and CHY zinc finger domain-containing protein 1 OS=Davidia involucrata OX=16924 GN=Din_028648 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology