Basic Information
Locus ID:
Lb0G37702
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Synaptotagmin-like mitochondrial-lipid-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold249 | 62962 | 66920 | + | Lb0G37702 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.76 | 62,133.33 Da | 32.00 | 106.44 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 292 | 391 | 3.06345E-23 | - |
| CDD | cd00030 | C2 | 468 | 546 | 1.80433E-21 | - |
| CDD | cd00030 | C2 | 292 | 391 | 3.06345E-23 | - |
| CDD | cd00030 | C2 | 468 | 546 | 1.80433E-21 | - |
| Pfam | PF00168 | C2 domain | 466 | 543 | 3.5E-19 | IPR000008 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 85 | 273 | 6.1E-9 | IPR039010 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 85 | 273 | 6.1E-9 | IPR039010 |
| Pfam | PF00168 | C2 domain | 291 | 391 | 2.1E-21 | IPR000008 |
| Pfam | PF00168 | C2 domain | 466 | 543 | 3.5E-19 | IPR000008 |
| Pfam | PF00168 | C2 domain | 291 | 391 | 2.1E-21 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 292 | 417 | 1.09E-26 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 292 | 417 | 1.09E-26 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 400 | 544 | 2.23E-24 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 400 | 544 | 2.23E-24 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 464 | 547 | 6.9E-24 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 280 | 415 | 4.0E-29 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 280 | 415 | 4.0E-29 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 464 | 547 | 6.9E-24 | IPR035892 |
| SMART | SM00239 | C2_3c | 288 | 388 | 8.4E-19 | IPR000008 |
| SMART | SM00239 | C2_3c | 467 | 551 | 6.6E-13 | IPR000008 |
| SMART | SM00239 | C2_3c | 467 | 551 | 6.6E-13 | IPR000008 |
| SMART | SM00239 | C2_3c | 288 | 388 | 8.4E-19 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 270 | 389 | 19.242004 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 80 | 277 | 28.098598 | IPR031468 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 445 | 551 | 17.935291 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 80 | 277 | 28.098598 | IPR031468 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 445 | 551 | 17.935291 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 270 | 389 | 19.242004 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 483 | 495 | 5.5E-7 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 531 | 539 | 5.5E-7 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 509 | 522 | 5.5E-7 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 531 | 539 | 5.5E-7 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 483 | 495 | 5.5E-7 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 509 | 522 | 5.5E-7 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_010696554.1 | synaptotagmin-5 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| A0JJX5 | Synaptotagmin-4 OS=Arabidopsis thaliana OX=3702 GN=SYT4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9EDV8 | Synaptotagmin-5 OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology