halophFGD

Basic Information

Locus ID: Lb0G37653

Species & Taxonomic ID: Limonium bicolor & 293754

Genome Assembly: GCA_023374045.1

Description: The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
scaffold239	26781	52388	+	Lb0G37653

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.33	187,708.31 Da	35.36	89.43	-0.23

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00200	WD40	14	249	5.82512E-52	-
CDD	cd00200	WD40	712	953	1.30753E-60	-
CDD	cd00200	WD40	712	953	1.30753E-60	-
CDD	cd00200	WD40	14	249	5.82512E-52	-
Pfam	PF00400	WD domain, G-beta repeat	775	813	1.3E-5	IPR001680
Pfam	PF04053	Coatomer WD associated region	394	650	4.0E-81	IPR006692
Pfam	PF04053	Coatomer WD associated region	1031	1081	5.0E-8	IPR006692
Pfam	PF00400	WD domain, G-beta repeat	215	249	6.9E-6	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	172	210	9.5E-6	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	732	769	0.0024	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	130	166	0.0066	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	818	854	4.8E-9	IPR001680
Pfam	PF04053	Coatomer WD associated region	1084	1405	8.3E-71	IPR006692
Pfam	PF00400	WD domain, G-beta repeat	917	953	2.4E-7	IPR001680
Pfam	PF04053	Coatomer WD associated region	1031	1081	5.0E-8	IPR006692
Pfam	PF00400	WD domain, G-beta repeat	172	210	9.5E-6	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	818	854	4.8E-9	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	917	953	2.4E-7	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	215	249	6.9E-6	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	775	813	1.3E-5	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	130	166	0.0066	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	732	769	0.0024	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	70	106	0.17	IPR001680
Pfam	PF04053	Coatomer WD associated region	1084	1405	8.3E-71	IPR006692
Pfam	PF00400	WD domain, G-beta repeat	70	106	0.17	IPR001680
Pfam	PF04053	Coatomer WD associated region	394	650	4.0E-81	IPR006692
SUPERFAMILY	SSF101908	Putative isomerase YbhE	877	1152	8.5E-20	-
SUPERFAMILY	SSF50978	WD40 repeat-like	711	958	2.32E-53	IPR036322
SUPERFAMILY	SSF50978	WD40 repeat-like	10	249	3.0E-53	IPR036322
SUPERFAMILY	SSF101908	Putative isomerase YbhE	877	1152	8.5E-20	-
SUPERFAMILY	SSF50978	WD40 repeat-like	10	249	3.0E-53	IPR036322
SUPERFAMILY	SSF50978	WD40 repeat-like	711	958	2.32E-53	IPR036322
Gene3D	G3DSA:2.130.10.10	-	8	108	2.5E-28	IPR015943
Gene3D	G3DSA:2.130.10.10	-	709	866	3.6E-63	IPR015943
Gene3D	G3DSA:2.130.10.10	-	867	958	1.5E-20	IPR015943
Gene3D	G3DSA:2.130.10.10	-	959	1154	2.4E-7	IPR015943
Gene3D	G3DSA:2.130.10.10	-	959	1154	2.4E-7	IPR015943
Gene3D	G3DSA:2.130.10.10	-	109	254	4.6E-57	IPR015943
Gene3D	G3DSA:1.25.40.470	-	1250	1440	1.3E-52	-
Gene3D	G3DSA:1.25.40.470	-	542	648	1.7E-41	-
Gene3D	G3DSA:2.130.10.10	-	709	866	3.6E-63	IPR015943
Gene3D	G3DSA:2.130.10.10	-	867	958	1.5E-20	IPR015943
Gene3D	G3DSA:2.130.10.10	-	8	108	2.5E-28	IPR015943
Gene3D	G3DSA:1.25.40.470	-	542	648	1.7E-41	-
Gene3D	G3DSA:2.130.10.10	-	109	254	4.6E-57	IPR015943
Gene3D	G3DSA:1.25.40.470	-	649	708	4.9E-18	-
Gene3D	G3DSA:1.25.40.470	-	649	708	4.9E-18	-
Gene3D	G3DSA:1.25.40.470	-	1250	1440	1.3E-52	-
SMART	SM00320	WD40_4	872	911	1.5	IPR001680
SMART	SM00320	WD40_4	1	40	2.2	IPR001680
SMART	SM00028	tpr_5	620	653	0.0088	IPR019734
SMART	SM00320	WD40_4	67	107	2.7E-5	IPR001680
SMART	SM00320	WD40_4	169	210	5.8E-7	IPR001680
SMART	SM00320	WD40_4	772	813	3.6E-7	IPR001680
SMART	SM00320	WD40_4	127	166	8.5E-5	IPR001680
SMART	SM00320	WD40_4	816	855	2.8E-12	IPR001680
SMART	SM00320	WD40_4	729	769	2.0E-8	IPR001680
SMART	SM00320	WD40_4	872	911	1.5	IPR001680
SMART	SM00320	WD40_4	914	953	3.1E-8	IPR001680
SMART	SM00320	WD40_4	213	252	7.5E-7	IPR001680
SMART	SM00028	tpr_5	620	653	0.0088	IPR019734
SMART	SM00320	WD40_4	772	813	3.6E-7	IPR001680
SMART	SM00320	WD40_4	67	107	2.7E-5	IPR001680
SMART	SM00320	WD40_4	127	166	8.5E-5	IPR001680
SMART	SM00320	WD40_4	169	210	5.8E-7	IPR001680
SMART	SM00320	WD40_4	213	252	7.5E-7	IPR001680
SMART	SM00320	WD40_4	816	855	2.8E-12	IPR001680
SMART	SM00320	WD40_4	1	40	2.2	IPR001680
SMART	SM00320	WD40_4	914	953	3.1E-8	IPR001680
SMART	SM00320	WD40_4	729	769	2.0E-8	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	823	854	15.755108	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	220	249	11.009724	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	823	854	12.973764	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	921	962	13.750016	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	736	778	13.649761	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	736	778	13.649761	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	220	249	9.230148	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	736	770	11.207411	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	143	175	9.171722	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	921	962	13.750016	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	823	854	12.973764	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	220	249	11.009724	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	779	822	12.212779	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	823	854	15.755108	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	921	956	11.022865	-
ProSiteProfiles	PS50005	TPR repeat profile.	620	653	9.2929	IPR019734
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	779	816	9.124694	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	74	106	8.67045	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	176	213	8.887423	-
ProSiteProfiles	PS50005	TPR repeat profile.	620	653	9.2929	IPR019734
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	176	213	8.887423	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	74	106	8.67045	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	176	219	11.912015	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	220	249	9.230148	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	779	816	9.124694	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	143	175	9.171722	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	921	956	11.022865	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	779	822	12.212779	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	736	770	11.207411	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	176	219	11.912015	IPR001680
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	898	912	-	IPR019775
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	898	912	-	IPR019775
PRINTS	PR00320	G protein beta WD-40 repeat signature	800	814	6.7E-6	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	842	856	6.7E-6	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	800	814	6.7E-6	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	940	954	6.7E-6	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	842	856	6.7E-6	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	940	954	6.7E-6	IPR020472
MobiDBLite	mobidb-lite	consensus disorder prediction	1496	1518	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1496	1518	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1488	1518	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1488	1518	-	-

Gene Ontology

Biological Process:

GO:0006886 (intracellular protein transport) GO:0016192 (vesicle-mediated transport)

Molecular Function:

GO:0005198 (structural molecule activity) GO:0005515 (protein binding)

Cellular Component:

GO:0030117 (membrane coat)

KEGG Pathway

KO Term:

K17302 (coatomer subunit beta')

Best hit

Source	Best Hit ID	Description
TAIR	AT1G79990.2	structural molecules.
RefSeq	XP_022843861.1	coatomer subunit beta'-2-like isoform X3 [Olea europaea var. sylvestris]
Swiss-Prot	Q9CAA0	Coatomer subunit beta'-1 OS=Arabidopsis thaliana OX=3702 GN=At1g79990 PE=2 SV=2
TrEMBL	A0A0D3F2A4	Coatomer subunit beta' OS=Oryza barthii OX=65489 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg13528, jg25369, jg27197
Aizoaceae	Mesembryanthemum crystallinum	2	gene_26151, gene_26152
Amaranthaceae	Atriplex hortensis	3	Ah010724, Ah011445, Ah011446
Amaranthaceae	Beta vulgaris	1	BVRB_9g220570
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg11437, Sbi_jg46395
Amaranthaceae	Salicornia europaea	1	Seu_jg20716
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00005264, GOSA_00009274
Amaranthaceae	Suaeda glauca	5	Sgl43451, Sgl55890, Sgl61080, Sgl62060, Sgl66622
Amaranthaceae	Chenopodium album	4	gene:ENSEOMG00000016355, gene:ENSEOMG00000019314 ... gene:ENSEOMG00000039774, gene:ENSEOMG00000051718
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.7BG0010840, CQ.Regalona.r1.9AG0010770 ... CQ.Regalona.r1.9AG0013780, CQ.Regalona.r1.9BG0011620
Anacardiaceae	Pistacia vera	2	pistato.v30125810, pistato.v30125840
Apiaceae	Apium graveolens	5	Ag2G00566, Ag2G01700, Ag4G01326, Ag5G00835, Ag6G01454
Arecaceae	Cocos nucifera	2	COCNU_02G000460, COCNU_06G000870
Arecaceae	Phoenix dactylifera	3	gene-LOC103697512, gene-LOC103704604, gene-LOC103721627
Asparagaceae	Asparagus officinalis	2	AsparagusV1_01.2026.V1.1, AsparagusV1_03.2987.V1.1
Asteraceae	Flaveria trinervia	5	Ftri18G17233, Ftri1G02389, Ftri8G19123, Ftri9G15219 ... FtriNA10366
Brassicaceae	Arabidopsis thaliana	3	AT1G52360.2, AT1G79990.1, AT3G15980.5
Brassicaceae	Eutrema salsugineum	2	Thhalv10011217m.g.v1.0, Thhalv10020009m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp1g38970.v2.2, Sp3g14330.v2.2, Sp5g35770.v2.2
Brassicaceae	Brassica nigra	6	BniB04g057410.2N, BniB06g028370.2N, BniB06g051770.2N ... BniB07g003500.2N, BniB07g028600.2N, BniB07g053830.2N
Casuarinaceae	Casuarina equisetifolia	7	Ceq05G0228, Ceq05G0229, Ceq05G0230, Ceq05G0231, Ceq05G0232 ... Ceq05G0233, Ceq05G0239
Casuarinaceae	Casuarina glauca	3	Cgl05G0237, Cgl05G0241, Cgl05G0244
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno02g11780, gene.Cymno16g00580
Dunaliellaceae	Dunaliella salina	2	Dusal.0118s00002.v1.0, Dusal.0838s00004.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate02g33060, gene.Thate06g15470
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-4534
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG01.375
Plantaginaceae	Plantago ovata	2	Pov_00015427, Pov_00024990
Plumbaginaceae	Limonium bicolor	5	Lb0G37653, Lb3G18460, Lb4G23246, Lb4G23247, Lb4G24604
Poaceae	Echinochloa crus-galli	9	AH06.205, AH06.2172, AH07.805, BH06.307, BH07.4009, BH07.930 ... CH06.2199, CH06.292, CH07.687
Poaceae	Eleusine coracana subsp. coracana	8	gene-QOZ80_2AG0105840, gene-QOZ80_2BG0159250 ... gene-QOZ80_4AG0326750, gene-QOZ80_6AG0508440, gene-QOZ80_6BG0460640, gene-QOZ80_6BG0497370, gene-QOZ80_9BG0700790, gene-QOZ80_9BG0714850
Poaceae	Hordeum vulgare	5	HORVU.MOREX.r3.3HG0218550.1, HORVU.MOREX.r3.3HG0218560.1 ... HORVU.MOREX.r3.5HG0439780.1, HORVU.MOREX.r3.6HG0576880.1, HORVU.MOREX.r3.7HG0648880.1
Poaceae	Lolium multiflorum	11	gene-QYE76_007481, gene-QYE76_007485, gene-QYE76_007486 ... gene-QYE76_007489, gene-QYE76_021529, gene-QYE76_027804, gene-QYE76_030605, gene-QYE76_030709, gene-QYE76_036868, gene-QYE76_036875, gene-QYE76_036883
Poaceae	Oryza coarctata	5	Oco03G005560, Oco04G005610, Oco11G002140, Oco11G012010 ... Oco12G002070
Poaceae	Oryza sativa	3	LOC_Os02g11830.2, LOC_Os02g11840.1, LOC_Os06g05180.3
Poaceae	Paspalum vaginatum	3	gene-BS78_04G082100, gene-BS78_10G035400 ... gene-BS78_10G179100
Poaceae	Puccinellia tenuiflora	9	Pt_Chr0202040, Pt_Chr0401756, Pt_Chr0401777, Pt_Chr0401778 ... Pt_Chr0401790, Pt_Chr0401796, Pt_Chr0401800, Pt_Chr0402244, Pt_Chr0501230
Poaceae	Sporobolus alterniflorus	9	Chr06G032770, Chr0G015150, Chr10G017290, Chr11G005220 ... Chr11G023120, Chr14G001600, Chr15G024130, Chr18G011980, Chr21G000720
Poaceae	Thinopyrum elongatum	8	Tel3E01G021500, Tel3E01G153000, Tel4E01G144800 ... Tel6E01G349900, Tel7E01G1011300, Tel7E01G1011500, Tel7E01G1011600, Tel7E01G187700
Poaceae	Triticum dicoccoides	20	gene_TRIDC3BG000710, gene_TRIDC3BG001890 ... gene_TRIDC3BG070490, gene_TRIDC4AG058530, gene_TRIDC4AG067370, gene_TRIDC4AG067390, gene_TRIDC4AG068050, gene_TRIDC4BG014360, gene_TRIDC5AG008480, gene_TRIDC6AG025470-100890, gene_TRIDC6AG025470-62404, gene_TRIDC6BG031740, gene_TRIDC7AG010080, gene_TRIDC7AG075100, gene_TRIDC7AG075270, gene_TRIDC7AG075460, gene_TRIDC7BG072010, gene_TRIDC7BG074000, gene_TRIDC7BG075480, gene_TRIDC7BG076690
Poaceae	Triticum aestivum	18	TraesCS1D02G434700.1, TraesCS3A02G012700.1 ... TraesCS3B02G005000.1, TraesCS3B02G015000.1, TraesCS4A02G388200.2, TraesCS4B02G092000.1, TraesCS4D02G089000.1, TraesCS5D02G502400.1, TraesCS6A02G130600.1, TraesCS6A02G179300.1, TraesCS6B02G206500.2, TraesCS6D02G165800.1, TraesCS7A02G088600.3, TraesCS7A02G541100.1, TraesCS7B02G480400.1, TraesCS7D02G083900.1, TraesCS7D02G554800.1, TraesCSU02G189400.1
Poaceae	Zea mays	10	Zm00001eb195340_P001, Zm00001eb195370_P001 ... Zm00001eb195680_P001, Zm00001eb205430_P001, Zm00001eb240380_P004, Zm00001eb265360_P001, Zm00001eb270540_P002, Zm00001eb377270_P002, Zm00001eb386030_P003, Zm00001eb424470_P001
Poaceae	Zoysia japonica	4	nbis-gene-33409, nbis-gene-34693, nbis-gene-40386 ... nbis-gene-44018
Poaceae	Zoysia macrostachya	3	Zma_g12430, Zma_g15178, Zma_g29091
Portulacaceae	Portulaca oleracea	5	evm.TU.LG06.1186, evm.TU.LG07.1711, evm.TU.LG11.541 ... evm.TU.LG15.1499, evm.TU.LG22.1135
Posidoniaceae	Posidonia oceanica	3	gene.Posoc03g24360, gene.Posoc08g15220, gene.Posoc09g11420
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.60453.1, evm.TU.60454.1 ... evm.TU.Scaffold_10_RagTag.1257
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-1215, nbisL1-mrna-27857, nbisL1-mrna-6978
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-10365, nbisL1-mrna-10715, nbisL1-mrna-5732
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-6425, nbisL1-mrna-6428, nbisL1-mrna-7905 ... nbisL1-mrna-8861
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000019l.762, evm.TU.utg000023l.163 ... evm.TU.utg000033l.581
Rhizophoraceae	Kandelia obovata	2	Maker00014791, Maker00018792
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-16380, nbisL1-mrna-18820, nbisL1-mrna-5230 ... nbisL1-mrna-7325
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-13166, nbisL1-mrna-18017, nbisL1-mrna-21262
Salicaceae	Populus euphratica	6	populus_peu02776, populus_peu12858, populus_peu12859 ... populus_peu33693, populus_peu33724, populus_peu33725
Solanaceae	Lycium barbarum	4	gene-LOC132598458, gene-LOC132603673, gene-LOC132633342 ... gene-LOC132634354
Solanaceae	Solanum chilense	4	SOLCI001215900, SOLCI001859400, SOLCI001859500 ... SOLCI005754900
Solanaceae	Solanum pennellii	4	gene-LOC107007027, gene-LOC107014066, gene-LOC107014070 ... gene-LOC107023332
Tamaricaceae	Reaumuria soongarica	2	STRG.21280_chr09_+, gene_10084
Tamaricaceae	Tamarix chinensis	3	TC05G0223, TC08G2071, TC10G1957
Zosteraceae	Zostera marina	9	Zosma04g03500.v3.1, Zosma05g02990.v3.1, Zosma06g08730.v3.1 ... Zosma06g30830.v3.1, Zosma435g00010.v3.1, Zosma555g00010.v3.1, Zosma555g00020.v3.1, Zosma644g00010.v3.1, Zosma869g00010.v3.1