Basic Information
Locus ID:
Lb0G37621
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold2327 | 8900 | 11807 | + | Lb0G37621 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.85 | 79,136.93 Da | 58.39 | 68.95 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 458 | 490 | 0.0014 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 412 | 447 | 5.8E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 296 | 330 | 8.5E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 296 | 330 | 8.5E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 412 | 447 | 5.8E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 458 | 490 | 0.0014 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 294 | 630 | 7.33E-46 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 294 | 630 | 7.33E-46 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 557 | 701 | 2.5E-7 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 245 | 349 | 4.4E-7 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 245 | 349 | 4.4E-7 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 374 | 556 | 2.9E-28 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 557 | 701 | 2.5E-7 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 374 | 556 | 2.9E-28 | IPR015943 |
| SMART | SM00320 | WD40_4 | 589 | 630 | 3.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 493 | 531 | 2.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 287 | 330 | 3.8E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 410 | 448 | 1.8E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 410 | 448 | 1.8E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 451 | 490 | 4.8E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 552 | 588 | 6.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 493 | 531 | 2.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 552 | 588 | 6.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 287 | 330 | 3.8E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 451 | 490 | 4.8E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 589 | 630 | 3.5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 457 | 499 | 12.279615 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 417 | 449 | 9.520146 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 457 | 492 | 10.07378 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 457 | 499 | 12.279615 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 457 | 492 | 10.07378 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 417 | 449 | 11.377324 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 298 | 331 | 9.806668 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 417 | 449 | 11.377324 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 417 | 449 | 9.520146 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 298 | 331 | 9.806668 | IPR001680 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 317 | 331 | 5.0E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 477 | 491 | 5.0E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 435 | 449 | 5.0E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 317 | 331 | 5.0E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 435 | 449 | 5.0E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 477 | 491 | 5.0E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 148 | 169 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 378 | 397 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 148 | 169 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 378 | 397 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42010.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_010676850.1 | uncharacterized WD repeat-containing protein C3H5.08c isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9R037 | WD repeat-containing protein 44 OS=Rattus norvegicus OX=10116 GN=Wdr44 PE=1 SV=1 | 0 | |
| TrEMBL | A0A151RI91 | Putative WD repeat-containing protein C3H5.08c OS=Cajanus cajan OX=3821 GN=KK1_036279 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology