Basic Information
Locus ID:
Lb0G37512
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold215 | 39395 | 44215 | + | Lb0G37512 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.53 | 39,665.69 Da | 50.73 | 80.38 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14382 | UBA2_RAD23_plant | 319 | 361 | 6.81067E-24 | - |
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 5.79227E-29 | - |
| CDD | cd14379 | UBA1_Rad23_plant | 143 | 192 | 1.09442E-31 | - |
| CDD | cd14382 | UBA2_RAD23_plant | 319 | 361 | 6.81067E-24 | - |
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 5.79227E-29 | - |
| CDD | cd14379 | UBA1_Rad23_plant | 143 | 192 | 1.09442E-31 | - |
| Pfam | PF09280 | XPC-binding domain | 242 | 297 | 1.8E-22 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 322 | 358 | 2.4E-11 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 242 | 297 | 1.8E-22 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 149 | 187 | 3.0E-15 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 322 | 358 | 2.4E-11 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 149 | 187 | 3.0E-15 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 4 | 76 | 1.2E-15 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 4 | 76 | 1.2E-15 | IPR000626 |
| SUPERFAMILY | SSF46934 | UBA-like | 145 | 197 | 1.78E-12 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 303 | 364 | 2.89E-15 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 303 | 364 | 2.89E-15 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 90 | 2.05E-21 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 90 | 2.05E-21 | IPR029071 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 240 | 305 | 3.4E-22 | IPR036353 |
| SUPERFAMILY | SSF46934 | UBA-like | 145 | 197 | 1.78E-12 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 240 | 305 | 3.4E-22 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 142 | 192 | 6.3E-22 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 142 | 192 | 6.3E-22 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 232 | 297 | 4.6E-27 | IPR036353 |
| Gene3D | G3DSA:1.10.10.540 | - | 232 | 297 | 4.6E-27 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 314 | 363 | 9.6E-24 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 1.6E-25 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 314 | 363 | 9.6E-24 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 1.6E-25 | - |
| SMART | SM00727 | CBM | 240 | 283 | 1.6E-5 | IPR006636 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 6.1E-20 | IPR000626 |
| SMART | SM00727 | CBM | 240 | 283 | 1.6E-5 | IPR006636 |
| SMART | SM00165 | uba_6 | 323 | 360 | 4.4E-8 | IPR015940 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 6.1E-20 | IPR000626 |
| SMART | SM00165 | uba_6 | 149 | 189 | 3.5E-6 | IPR015940 |
| SMART | SM00165 | uba_6 | 323 | 360 | 4.4E-8 | IPR015940 |
| SMART | SM00165 | uba_6 | 149 | 189 | 3.5E-6 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 364 | 2.8E-126 | IPR004806 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 364 | 2.8E-126 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 147 | 190 | 13.534875 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 321 | 361 | 15.390351 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 147 | 190 | 13.534875 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 18.061903 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 18.061903 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 321 | 361 | 15.390351 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 268 | 290 | 1.7E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 268 | 290 | 1.7E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 317 | 333 | 1.7E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 334 | 348 | 1.7E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 349 | 364 | 1.7E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 317 | 333 | 1.7E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 349 | 364 | 1.7E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 334 | 348 | 1.7E-32 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 123 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 123 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79650.2 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_010695313.1 | probable ubiquitin receptor RAD23a isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q84L33 | Ubiquitin receptor RAD23b OS=Arabidopsis thaliana OX=3702 GN=RAD23B PE=1 SV=3 | 0 | |
| TrEMBL | A0A7C8Z7R0 | Ubiquitin receptor RAD23 OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology