Basic Information
Locus ID:
Lb0G37439
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
IQ-domain
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold2025 | 5325 | 10585 | + | Lb0G37439 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.35 | 112,128.10 Da | 59.26 | 61.66 | -0.79 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00612 | IQ calmodulin-binding motif | 278 | 293 | 0.012 | IPR000048 |
| Pfam | PF00612 | IQ calmodulin-binding motif | 299 | 316 | 2.1E-4 | IPR000048 |
| Pfam | PF00612 | IQ calmodulin-binding motif | 299 | 316 | 2.1E-4 | IPR000048 |
| Pfam | PF00612 | IQ calmodulin-binding motif | 278 | 293 | 0.012 | IPR000048 |
| Gene3D | G3DSA:1.20.5.190 | - | 276 | 322 | 2.9E-9 | - |
| Gene3D | G3DSA:1.20.5.190 | - | 276 | 322 | 2.9E-9 | - |
| SMART | SM00015 | iq_5 | 297 | 318 | 0.42 | IPR000048 |
| SMART | SM00015 | iq_5 | 274 | 296 | 29.0 | IPR000048 |
| SMART | SM00015 | iq_5 | 274 | 296 | 29.0 | IPR000048 |
| SMART | SM00015 | iq_5 | 297 | 318 | 0.42 | IPR000048 |
| ProSiteProfiles | PS50096 | IQ motif profile. | 297 | 326 | 8.6266 | IPR000048 |
| ProSiteProfiles | PS50096 | IQ motif profile. | 275 | 303 | 7.9495 | IPR000048 |
| ProSiteProfiles | PS50096 | IQ motif profile. | 297 | 326 | 8.6266 | IPR000048 |
| ProSiteProfiles | PS50096 | IQ motif profile. | 275 | 303 | 7.9495 | IPR000048 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 20 | 185 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 111 | 152 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 773 | 1037 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 890 | 917 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1009 | 1037 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 668 | 694 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 580 | 610 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 556 | 579 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 979 | 995 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 820 | 877 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 795 | 810 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 547 | 611 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 547 | 611 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 20 | 185 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 773 | 1037 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 820 | 877 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 890 | 917 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 111 | 152 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 950 | 977 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 918 | 938 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1009 | 1037 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 795 | 810 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 668 | 685 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 668 | 685 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 950 | 977 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 580 | 610 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 668 | 694 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 979 | 995 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 556 | 579 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 918 | 938 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19870.2 | - | 0 |
| RefSeq | XP_010692700.1 | protein IQ-DOMAIN 32 isoform X3 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9FXI5 | Protein IQ-DOMAIN 32 OS=Arabidopsis thaliana OX=3702 GN=IQD32 PE=1 SV=3 | 0 | |
| TrEMBL | A0A1R3IY02 | IQ motif, EF-hand binding site OS=Corchorus capsularis OX=210143 GN=CCACVL1_09028 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg11802 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8502 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah036376 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg39750, Sbi_jg55103 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg14591 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00013118 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl12465, Sgl17743 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000016978, gene:ENSEOMG00000035795 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0018940, CQ.Regalona.r1.1BG0004250 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30047510, pistato.v30049570 |
| Apiaceae | Apium graveolens | 2 | Ag4G02259, Ag9G00864 |
| Arecaceae | Cocos nucifera | 3 | COCNU_07G001770, COCNU_08G006910, COCNU_10G001250 |
| Arecaceae | Phoenix dactylifera | 6 | gene-LOC103703868, gene-LOC103708215, gene-LOC103716349 ... |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.1651.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri6G31675, Ftri8G00256, Ftri9G11888 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G19870.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10006839m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g17670.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g008390.2N, BniB04g034620.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G0919 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G0994 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno03g05050, gene.Cymno10g04230 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g20490, gene.Thate08g19750 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-1347, nbisL1-mrna-8893 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.667 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00020711 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb0G37439, Lb3G15844 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.2610, BH09.2834, CH09.3033 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0300600, gene-QOZ80_4BG0331270 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0201150.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_047181 |
| Poaceae | Oryza coarctata | 2 | Oco07G018360, Oco08G017690 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g56740.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G270800 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0300429 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr23G001730, Chr25G001340, Chr26G017580, Chr30G001360 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G834900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG069530, gene_TRIDC2BG075120 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G492300.1, TraesCS2B02G520500.3 ... |
| Poaceae | Zea mays | 2 | Zm00001eb067350_P001, Zm00001eb432990_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-23114, nbis-gene-6107 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g20623, Zma_g22157, Zma_g22722 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG12.1709 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g12060, gene.Posoc06g08160 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.1253 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-19005 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-812 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15382 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000018l.403 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003398 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-13359 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-11115 |
| Salicaceae | Populus euphratica | 2 | populus_peu15318, populus_peu32966 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132628098 |
| Solanaceae | Solanum chilense | 1 | SOLCI000409100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107017764 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.31215_chr11_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G2802 |
| Zosteraceae | Zostera marina | 3 | Zosma01g26330.v3.1, Zosma05g31600.v3.1, Zosma1103g00060.v3.1 |