halophFGD

Basic Information

Locus ID: Lb0G37234

Species & Taxonomic ID: Limonium bicolor & 293754

Genome Assembly: GCA_023374045.1

Description: Belongs to the phosphoglycerate kinase family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
scaffold1705	1455	6090	+	Lb0G37234

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.38	76,863.68 Da	41.34	92.59	-0.08

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd02440	AdoMet_MTases	503	615	1.02314E-5	-
CDD	cd02440	AdoMet_MTases	503	615	1.02314E-5	-
Pfam	PF02390	Putative methyltransferase	500	634	9.3E-26	IPR003358
Pfam	PF00162	Phosphoglycerate kinase	99	457	2.4E-61	IPR001576
Pfam	PF02390	Putative methyltransferase	500	634	9.3E-26	IPR003358
Pfam	PF00162	Phosphoglycerate kinase	99	457	2.4E-61	IPR001576
SUPERFAMILY	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases	502	677	5.05E-15	IPR029063
SUPERFAMILY	SSF53748	Phosphoglycerate kinase	97	481	9.19E-71	IPR036043
SUPERFAMILY	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases	502	677	5.05E-15	IPR029063
SUPERFAMILY	SSF53748	Phosphoglycerate kinase	97	481	9.19E-71	IPR036043
Gene3D	G3DSA:3.40.50.1260	-	99	478	1.3E-69	IPR015824
Gene3D	G3DSA:3.40.50.150	Vaccinia Virus protein VP39	480	686	3.4E-47	-
Gene3D	G3DSA:3.40.50.1260	-	257	472	1.3E-69	IPR015824
Gene3D	G3DSA:3.40.50.150	Vaccinia Virus protein VP39	480	686	3.4E-47	-
Gene3D	G3DSA:3.40.50.1260	-	99	478	1.3E-69	IPR015824
Gene3D	G3DSA:3.40.50.1260	-	257	472	1.3E-69	IPR015824
ProSiteProfiles	PS51625	SAM-dependent methyltransferase TRMB-type domain profile.	453	685	40.625309	IPR003358
ProSiteProfiles	PS51625	SAM-dependent methyltransferase TRMB-type domain profile.	453	685	40.625309	IPR003358
PRINTS	PR00477	Phosphoglycerate kinase family signature	99	115	7.3E-21	IPR001576
PRINTS	PR00477	Phosphoglycerate kinase family signature	196	211	7.3E-21	IPR001576
PRINTS	PR00477	Phosphoglycerate kinase family signature	255	277	7.3E-21	IPR001576
PRINTS	PR00477	Phosphoglycerate kinase family signature	278	297	7.3E-21	IPR001576
PRINTS	PR00477	Phosphoglycerate kinase family signature	99	115	7.3E-21	IPR001576
PRINTS	PR00477	Phosphoglycerate kinase family signature	196	211	7.3E-21	IPR001576
PRINTS	PR00477	Phosphoglycerate kinase family signature	224	246	7.3E-21	IPR001576
PRINTS	PR00477	Phosphoglycerate kinase family signature	399	424	7.3E-21	IPR001576
PRINTS	PR00477	Phosphoglycerate kinase family signature	278	297	7.3E-21	IPR001576
PRINTS	PR00477	Phosphoglycerate kinase family signature	121	143	7.3E-21	IPR001576
PRINTS	PR00477	Phosphoglycerate kinase family signature	399	424	7.3E-21	IPR001576
PRINTS	PR00477	Phosphoglycerate kinase family signature	121	143	7.3E-21	IPR001576
PRINTS	PR00477	Phosphoglycerate kinase family signature	255	277	7.3E-21	IPR001576
PRINTS	PR00477	Phosphoglycerate kinase family signature	224	246	7.3E-21	IPR001576

Gene Ontology

Biological Process:

GO:0006096 (glycolytic process) GO:0006400 (tRNA modification)

Molecular Function:

GO:0004618 (phosphoglycerate kinase activity) GO:0008176 (tRNA (guanine(46)-N7)-methyltransferase activity)

KEGG Pathway

KO Term:

K00927 (phosphoglycerate kinase [EC:2.7.2.3])

Pathway:

ko00010 (Glycolysis / Gluconeogenesis) map00010 (Glycolysis / Gluconeogenesis) ko00710 (Carbon fixation by Calvin cycle) map00710 (Carbon fixation by Calvin cycle) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites) ko01120 (Microbial metabolism in diverse environments) map01120 (Microbial metabolism in diverse environments) ko01200 (Carbon metabolism) map01200 (Carbon metabolism) ko01230 (Biosynthesis of amino acids) map01230 (Biosynthesis of amino acids)

Module:

M00001 (Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate) M00002 (Glycolysis, core module involving three-carbon compounds) M00003 (Gluconeogenesis, oxaloacetate => fructose-6P) M00165 (Reductive pentose phosphate cycle (Calvin cycle)) M00308 (Semi-phosphorylative Entner-Doudoroff pathway, gluconate => glycerate-3P) M00552 (D-galactonate degradation, De Ley-Doudoroff pathway, D-galactonate => glycerate-3P)

Reaction:

R01512 (ATP + 3-Phospho-D-glycerate <=> ADP + 3-Phospho-D-glyceroyl phosphate)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G17660.1	tRNA (guanine-N-7) methyltransferase.
RefSeq	XP_050243150.1	uncharacterized protein LOC126691880 isoform X1 [Quercus robur]
Swiss-Prot	A5GW73	Phosphoglycerate kinase OS=Synechococcus sp. (strain RCC307) OX=316278 GN=pgk PE=3 SV=1
TrEMBL	A0A200R5N2	Phosphoglycerate kinase OS=Macleaya cordata OX=56857 GN=BVC80_1835g425 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg14980
Aizoaceae	Mesembryanthemum crystallinum	1	gene_25359
Amaranthaceae	Atriplex hortensis	1	Ah030458
Amaranthaceae	Beta vulgaris	1	BVRB_7g161710
Amaranthaceae	Chenopodium album	4	gene:ENSEOMG00000006883, gene:ENSEOMG00000008075 ... gene:ENSEOMG00000036971, gene:ENSEOMG00000040777
Amaranthaceae	Chenopodium quinoa	3	CQ.Regalona.r1.7AG0018050, CQ.Regalona.r1.7BG0020340 ... CQ.Regalona.r1.7BG0020350
Anacardiaceae	Pistacia vera	1	pistato.v30273130
Apiaceae	Apium graveolens	1	Ag2G02987
Arecaceae	Cocos nucifera	1	COCNU_07G010790
Arecaceae	Phoenix dactylifera	1	gene-LOC103721309
Asparagaceae	Asparagus officinalis	1	AsparagusV1_04.1766.V1.1
Asteraceae	Flaveria trinervia	1	Ftri6G21770
Casuarinaceae	Casuarina equisetifolia	1	Ceq08G1355
Casuarinaceae	Casuarina glauca	1	Cgl08G1387
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno17g01050
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate01g06930
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG01.1481
Plantaginaceae	Plantago ovata	1	Pov_00006323
Plumbaginaceae	Limonium bicolor	1	Lb0G37234
Poaceae	Echinochloa crus-galli	4	AH01.1963, BH01.2258, BH01.2263, CH01.2357
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_2AG0125800, gene-QOZ80_2BG0181590
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.1HG0038640.1 ... HORVU.MOREX.r3.5HG0448930.1.CDS1
Poaceae	Lolium multiflorum	1	gene-QYE76_013191
Poaceae	Oryza coarctata	1	Oco19G004960
Poaceae	Oryza sativa	1	LOC_Os10g30550.1
Poaceae	Paspalum vaginatum	1	gene-BS78_01G223300
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0502452, Pt_Chr0502456
Poaceae	Sporobolus alterniflorus	2	Chr09G010060, Chr13G015060
Poaceae	Thinopyrum elongatum	1	Tel1E01G261200
Poaceae	Triticum dicoccoides	4	gene_TRIDC1AG021080, gene_TRIDC1BG025560 ... gene_TRIDC2AG036180, gene_TRIDC2AG036560
Poaceae	Triticum aestivum	3	TraesCS1A02G140900.1, TraesCS1B02G157400.1 ... TraesCS1D02G139800.1
Poaceae	Zea mays	1	Zm00001eb047240_P002
Poaceae	Zoysia japonica	1	nbis-gene-48061
Poaceae	Zoysia macrostachya	1	Zma_g16108
Portulacaceae	Portulaca oleracea	2	evm.TU.LG05.852, evm.TU.LG25.475
Posidoniaceae	Posidonia oceanica	1	gene.Posoc10g11900
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_1_RagTag.1536
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-5238
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-21004
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-3924
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000016l.533
Rhizophoraceae	Kandelia obovata	1	Maker00017095
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-7705
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-358
Salicaceae	Populus euphratica	2	populus_peu07922, populus_peu14453
Solanaceae	Lycium barbarum	1	gene-LOC132630015
Solanaceae	Solanum pennellii	1	gene-LOC107031747
Tamaricaceae	Reaumuria soongarica	1	gene_4520
Tamaricaceae	Tamarix chinensis	1	TC02G1912
Zosteraceae	Zostera marina	1	Zosma03g32230.v3.1