Basic Information
Locus ID:
Lb0G37147
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Protein FAR1-RELATED SEQUENCE 5-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold1582 | 5309 | 11583 | - | Lb0G37147 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.75 | 87,848.86 Da | 44.08 | 70.15 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03101 | FAR1 DNA-binding domain | 47 | 131 | 5.9E-14 | IPR004330 |
| Pfam | PF10551 | MULE transposase domain | 255 | 338 | 7.9E-19 | IPR018289 |
| Pfam | PF03101 | FAR1 DNA-binding domain | 47 | 131 | 5.9E-14 | IPR004330 |
| Pfam | PF10551 | MULE transposase domain | 255 | 338 | 7.9E-19 | IPR018289 |
| ProSiteProfiles | PS50966 | Zinc finger SWIM-type profile. | 514 | 552 | 8.345102 | IPR007527 |
| ProSiteProfiles | PS50966 | Zinc finger SWIM-type profile. | 514 | 552 | 8.345102 | IPR007527 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 646 | 663 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 646 | 663 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 646 | 687 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 664 | 684 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 646 | 687 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 664 | 684 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_019154343.1 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Ipomoea nil] | 0 |
| TrEMBL | A0A7N0RCM3 | Protein FAR1-RELATED SEQUENCE OS=Kalanchoe fedtschenkoi OX=63787 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Suaeda aralocaspica | 4 | GOSA_00014604, GOSA_00014605, GOSA_00014807, GOSA_00023619 |
| Amaranthaceae | Suaeda glauca | 69 | Sgl00340, Sgl00670, Sgl00740, Sgl00768, Sgl02587, Sgl03588 ... |
| Plumbaginaceae | Limonium bicolor | 3 | Lb0G37147, Lb3G20849, Lb6G29885 |
| Tamaricaceae | Reaumuria soongarica | 2 | MSTRG.16888_chr09_+, STRG.24247_chr10_+ |