Basic Information
Locus ID:
Lb0G37095
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Belongs to the small heat shock protein (HSP20) family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold1500 | 14941 | 16429 | + | Lb0G37095 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.54 | 44,624.01 Da | 82.39 | 75.66 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06464 | ACD_sHsps-like | 40 | 115 | 9.87243E-13 | - |
| CDD | cd06464 | ACD_sHsps-like | 40 | 115 | 9.87243E-13 | - |
| Pfam | PF00011 | Hsp20/alpha crystallin family | 39 | 121 | 2.9E-5 | IPR002068 |
| Pfam | PF00011 | Hsp20/alpha crystallin family | 39 | 121 | 2.9E-5 | IPR002068 |
| SUPERFAMILY | SSF49764 | HSP20-like chaperones | 26 | 116 | 6.28E-13 | IPR008978 |
| SUPERFAMILY | SSF49764 | HSP20-like chaperones | 26 | 116 | 6.28E-13 | IPR008978 |
| Gene3D | G3DSA:2.60.40.790 | - | 17 | 117 | 7.8E-14 | IPR008978 |
| Gene3D | G3DSA:2.60.40.790 | - | 17 | 117 | 7.8E-14 | IPR008978 |
| ProSiteProfiles | PS01031 | Small heat shock protein (sHSP) domain profile. | 26 | 130 | 17.012182 | IPR002068 |
| ProSiteProfiles | PS01031 | Small heat shock protein (sHSP) domain profile. | 26 | 130 | 17.012182 | IPR002068 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 266 | 285 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 128 | 161 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 19 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 181 | 199 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 306 | 327 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 210 | 240 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 133 | 161 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 267 | 285 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 306 | 327 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 19 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 267 | 285 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 181 | 200 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 128 | 161 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 266 | 285 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 210 | 240 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 133 | 161 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 181 | 199 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 181 | 200 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G04890.1 | HSP20-like chaperones superfamily protein. Specifically restricts the long-distance movement of tobacco etch potyvirus (TEV) without involving either hypersensitive cell death or systemic acquired resistance. Multidomain protein containing an N-terminal region with high similarity to plant small heat shock proteins (HSPs). | 0 |
| RefSeq | XP_021835076.1 | protein RESTRICTED TEV MOVEMENT 2-like [Spinacia oleracea] | 0 |
| D9UBX6 | Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RTM2 PE=3 SV=1 | 0 | |
| TrEMBL | A0A0K9RBD2 | SHSP domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_092330 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology