Basic Information
Locus ID:
Lb0G36968
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
ATP-dependent RNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold1316 | 11276 | 15222 | + | Lb0G36968 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.28 | 44,084.22 Da | 43.65 | 99.67 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18045 | DEADc_EIF4AIII_DDX48 | 36 | 236 | 7.05299E-120 | - |
| CDD | cd18787 | SF2_C_DEAD | 271 | 363 | 8.91627E-49 | - |
| CDD | cd18045 | DEADc_EIF4AIII_DDX48 | 36 | 236 | 7.05299E-120 | - |
| CDD | cd18787 | SF2_C_DEAD | 271 | 363 | 8.91627E-49 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 277 | 354 | 1.9E-26 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 59 | 221 | 1.4E-40 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 277 | 354 | 1.9E-26 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 59 | 221 | 1.4E-40 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 102 | 376 | 8.52E-64 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 102 | 376 | 8.52E-64 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 269 | 392 | 1.3E-45 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 20 | 238 | 1.9E-63 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 269 | 392 | 1.3E-45 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 20 | 238 | 1.9E-63 | IPR027417 |
| SMART | SM00490 | helicmild6 | 273 | 354 | 2.1E-34 | IPR001650 |
| SMART | SM00490 | helicmild6 | 273 | 354 | 2.1E-34 | IPR001650 |
| SMART | SM00487 | ultradead3 | 53 | 250 | 5.2E-52 | IPR014001 |
| SMART | SM00487 | ultradead3 | 53 | 250 | 5.2E-52 | IPR014001 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 65 | 235 | 27.522787 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 246 | 393 | 23.764091 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 34 | 62 | 10.185193 | IPR014014 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 34 | 62 | 10.185193 | IPR014014 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 246 | 393 | 23.764091 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 65 | 235 | 27.522787 | IPR014001 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G19760.1 | eukaryotic initiation factor 4A-III. Encodes an RNA helicase that may be a component of the Exon Junction Complex. Subcellular localization is modulated by stress. Under normal conditions it is localized to the nuceloplasm but under hyopoxic conditions it localizes to the nucleolus and splicing speckles. | 0 |
| RefSeq | XP_034687754.1 | eukaryotic initiation factor 4A-3 [Vitis riparia] | 0 |
| P41380 | Eukaryotic initiation factor 4A-3 OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5B6ZVD8 | Putative eukaryotic initiation factor 4A-3 OS=Davidia involucrata OX=16924 GN=Din_017908 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology