Basic Information
Locus ID:
GOSA_00028553
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
RNA polymerase II C-terminal domain phosphatase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig519 | 97496 | 107356 | + | GOSA_00028553 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.97 | 55,171.32 Da | 50.63 | 76.55 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10845 | DSRM_RNAse_III_family | 376 | 435 | 2.95046E-11 | - |
| Pfam | PF00035 | Double-stranded RNA binding motif | 375 | 435 | 1.7E-7 | IPR014720 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 375 | 437 | 5.29E-13 | - |
| Gene3D | G3DSA:3.30.160.20 | - | 371 | 443 | 4.1E-10 | - |
| SMART | SM00358 | DRBM_3 | 374 | 438 | 1.9E-9 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 373 | 439 | 12.717945 | IPR014720 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 223 | 245 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 176 | 199 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 229 | 245 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01270.1 | carboxyl-terminal domain (ctd) phosphatase-like 2. Encodes CPL2, a carboxyl-terminal domain (CTD) phosphatase that dephosphorylates CTD Ser5-PO4 of the RNA polymerase II complex. Regulates plant growth, stress and auxin responses. | 0 |
| RefSeq | XP_048491226.1 | RNA polymerase II C-terminal domain phosphatase-like 2 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q5YDB5 | RNA polymerase II C-terminal domain phosphatase-like 2 OS=Arabidopsis thaliana OX=3702 GN=CPL2 PE=1 SV=3 | 0 | |
| TrEMBL | A0A803NAQ6 | protein-serine/threonine phosphatase OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology