Basic Information
Locus ID:
GOSA_00028552
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
RNA polymerase II C-terminal domain phosphatase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig519 | 84765 | 87153 | + | GOSA_00028552 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.23 | 39,004.74 Da | 41.67 | 96.85 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 240 | 327 | 3.7E-6 | IPR004274 |
| SUPERFAMILY | SSF56784 | HAD-like | 132 | 316 | 3.9E-14 | IPR036412 |
| Gene3D | G3DSA:3.40.50.1000 | - | 136 | 337 | 2.9E-18 | IPR023214 |
| SMART | SM00577 | forpap2 | 230 | 338 | 1.8E-4 | IPR004274 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 139 | 340 | 13.751409 | IPR004274 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01270.1 | carboxyl-terminal domain (ctd) phosphatase-like 2. Encodes CPL2, a carboxyl-terminal domain (CTD) phosphatase that dephosphorylates CTD Ser5-PO4 of the RNA polymerase II complex. Regulates plant growth, stress and auxin responses. | 0 |
| RefSeq | XP_021854601.1 | RNA polymerase II C-terminal domain phosphatase-like 2 isoform X2 [Spinacia oleracea] | 0 |
| Q5YDB5 | RNA polymerase II C-terminal domain phosphatase-like 2 OS=Arabidopsis thaliana OX=3702 GN=CPL2 PE=1 SV=3 | 0 | |
| TrEMBL | A0A0K9RJ10 | protein-serine/threonine phosphatase OS=Spinacia oleracea OX=3562 GN=SOVF_067230 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology