Basic Information
Locus ID:
GOSA_00028099
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
Belongs to the universal ribosomal protein uL23 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig1262 | 37719 | 42402 | + | GOSA_00028099 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.00 | 23,341.21 Da | 24.75 | 79.66 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03939 | Ribosomal protein L23, N-terminal domain | 68 | 117 | 2.7E-17 | IPR005633 |
| Pfam | PF00276 | Ribosomal protein L23 | 128 | 188 | 3.4E-14 | IPR013025 |
| SUPERFAMILY | SSF54189 | Ribosomal proteins S24e, L23 and L15e | 125 | 201 | 2.77E-26 | IPR012678 |
| Gene3D | G3DSA:3.30.70.330 | - | 89 | 208 | 9.6E-52 | IPR012677 |
| ProSitePatterns | PS00050 | Ribosomal protein L23 signature. | 186 | 201 | - | IPR001014 |
| Hamap | MF_01369_A | 50S ribosomal protein L23 [rplW]. | 128 | 208 | 22.01582 | IPR013025 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 47 | 68 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G55280.3 | ribosomal protein L23AB. 60S ribosomal protein L23A (RPL23aB). Paralog of RPL23aA. | 0 |
| RefSeq | XP_010669821.1 | 60S ribosomal protein L23A [Beta vulgaris subsp. vulgaris] | 0 |
| O22644 | Large ribosomal subunit protein uL23 OS=Fritillaria agrestis OX=64177 GN=RPL23A PE=2 SV=1 | 0 | |
| TrEMBL | Q9LWB3 | Ribosomal protein L23 OS=Spinacia oleracea OX=3562 GN=rp123 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg12853, jg14894, jg32091, jg32580 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_12934, gene_19889 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah023780, Ah027125, Ah038285 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_2g037160, BVRB_9g204620 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg14518, Sbi_jg19945, Sbi_jg23446, Sbi_jg53778 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg10396, Seu_jg17297 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00012692, GOSA_00028099 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl63677, Sgl68175, Sgl78241, Sgl80733 |
| Amaranthaceae | Chenopodium album | 8 | gene:ENSEOMG00000012672, gene:ENSEOMG00000016569 ... |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.1AG0005870, CQ.Regalona.r1.3AG0025390 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30059770 |
| Apiaceae | Apium graveolens | 3 | Ag2G02762, Ag4G01568, Ag4G01569 |
| Arecaceae | Cocos nucifera | 1 | COCNU_09G006190 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103712982, gene-LOC103717303, gene-LOC103723931 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_01.1012.V1.1, AsparagusV1_10.1775.V1.1 ... |
| Asteraceae | Flaveria trinervia | 4 | Ftri17G30743, Ftri6G09707, Ftri8G15409, Ftri9G13869 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G39460.1, AT3G55280.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10010790m.g.v1.0, Thhalv10015923m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp4g21760.v2.2, Sp5g07180.v2.2 |
| Brassicaceae | Brassica nigra | 6 | BniB01g005710.2N, BniB01g005730.2N, BniB06g005390.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 3 | Ceq02G0719, Ceq08G2273, Ceq08G2276 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G0731 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno04g15570, gene.Cymno05g16280 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0705s00006.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g33630, gene.Thate02g00700 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-600 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.1563, evm.TU.LG09.1338 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00003321, Pov_00006384 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb0G37259, Lb2G11337, Lb3G16339 |
| Poaceae | Echinochloa crus-galli | 9 | AH01.1244, AH07.2575, BH01.1321, BH01.1322, BH07.2386 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0137220, gene-QOZ80_2BG0192820 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_002842, gene-QYE76_052910 |
| Poaceae | Oryza coarctata | 4 | Oco01G009860, Oco02G010260, Oco07G009870, Oco08G009650 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g24690.1, LOC_Os04g42270.2 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_10G027200, gene-BS78_10G027900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0603562 |
| Poaceae | Sporobolus alterniflorus | 10 | Chr06G008390, Chr09G026060, Chr13G007750, Chr15G009900 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G622900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG051280, gene_TRIDC2BG054940 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G354200.2, TraesCS2B02G375100.1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb078210_P001, Zm00001eb281810_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-29677, nbis-gene-37001 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g13876, Zma_g19996 |
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG04.1469, evm.TU.LG04.1470, evm.TU.LG04.2286 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g34740, gene.Posoc04g05290 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_12_RagTag.286, evm.TU.Scaffold_13_RagTag.804 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-24511, nbisL1-mrna-30233 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-19684 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-16172, nbisL1-mrna-19564 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000015l.467, evm.TU.utg000027l.398 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00015794, Maker00017854 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-4387, nbisL1-mrna-5587 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-11792, nbisL1-mrna-15002 |
| Salicaceae | Populus euphratica | 4 | populus_peu06380, populus_peu12509, populus_peu25862 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132606870, gene-LOC132607069, gene-LOC132630213 |
| Solanaceae | Solanum chilense | 2 | SOLCI002760000, SOLCI006210500 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107031585, gene-LOC107031855, gene-LOC107032335 |
| Tamaricaceae | Reaumuria soongarica | 3 | STRG.29301_chr10_-, STRG.29302_chr10_+, gene_19 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G3670, TC04G0047 |
| Zosteraceae | Zostera marina | 2 | Zosma06g08640.v3.1, Zosma06g14520.v3.1 |