Basic Information
Locus ID:
GOSA_00027923
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
RNA polymerase II C-terminal domain phosphatase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig112 | 198524 | 209551 | + | GOSA_00027923 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.93 | 115,150.16 Da | 61.35 | 76.81 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07521 | HAD_FCP1-like | 250 | 384 | 1.25467E-20 | - |
| Pfam | PF00035 | Double-stranded RNA binding motif | 927 | 995 | 5.2E-6 | IPR014720 |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 273 | 383 | 7.1E-7 | IPR004274 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 926 | 1001 | 2.48E-14 | - |
| SUPERFAMILY | SSF56784 | HAD-like | 152 | 410 | 9.06E-20 | IPR036412 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 792 | 856 | 2.98E-7 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 152 | 414 | 2.4E-26 | IPR023214 |
| Gene3D | G3DSA:3.30.160.20 | - | 926 | 998 | 4.1E-11 | - |
| SMART | SM00358 | DRBM_3 | 926 | 996 | 2.3E-9 | IPR014720 |
| SMART | SM00358 | DRBM_3 | 793 | 857 | 0.036 | IPR014720 |
| SMART | SM00577 | forpap2 | 217 | 393 | 1.0E-14 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 925 | 997 | 13.106365 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 821 | 858 | 9.707684 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 158 | 406 | 15.809887 | IPR004274 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 607 | 638 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 728 | 752 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 613 | 638 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1002 | 1044 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 710 | 767 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21670.1 | C-terminal domain phosphatase-like 1. encodes a a novel transcriptional repressor harboring two double-stranded RNA-binding domains and a region homologous to the catalytic domain of RNA polymerase II C-terminal domain phosphatases found in yeast and in animals that regulate gene transcription. Protein exhibits innate phosphatase activity in vitro. Mutants exhibit hyperresponsiveness to ABA, cold, and NaCl. | 0 |
| RefSeq | XP_010686545.1 | RNA polymerase II C-terminal domain phosphatase-like 1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q5YDB6 | RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana OX=3702 GN=CPL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QNK5 | protein-serine/threonine phosphatase OS=Spinacia oleracea OX=3562 GN=SOVF_159350 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology