Basic Information
Locus ID:
GOSA_00027847
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
transposon protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig583 | 189023 | 198025 | + | GOSA_00027847 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.38 | 98,250.33 Da | 49.39 | 65.36 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03004 | Plant transposase (Ptta/En/Spm family) | 694 | 757 | 8.7E-9 | IPR004252 |
| Pfam | PF13963 | Transposase-associated domain | 4 | 72 | 7.2E-13 | IPR029480 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 430 | 552 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 382 | 411 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 430 | 560 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 345 | 367 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 394 | 411 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 277 | 296 | - | - |
| Coils | Coil | Coil | 812 | 832 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021755723.1 | uncharacterized protein LOC110720933 isoform X2 [Chenopodium quinoa] | 0 |
| TrEMBL | A0A803N3C7 | Transposase OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah007497 |
| Amaranthaceae | Beta vulgaris | 5 | BVRB_6g135340, BVRB_7g164200, BVRB_7g165950, BVRB_9g208240 ... |
| Amaranthaceae | Suaeda aralocaspica | 12 | GOSA_00014580, GOSA_00014581, GOSA_00016668, GOSA_00017776 ... |
| Amaranthaceae | Suaeda glauca | 24 | Sgl03145, Sgl03950, Sgl08246, Sgl09020, Sgl09021, Sgl10179 ... |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000002377, gene:ENSEOMG00000011354 ... |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.2BG0010590, CQ.Regalona.r1.2BG0014070 ... |