Basic Information
Locus ID:
GOSA_00027648
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig309 | 93771 | 105544 | - | GOSA_00027648 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.46 | 97,978.41 Da | 62.52 | 66.69 | -0.91 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 802 | 842 | 1.13765E-20 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 800 | 847 | 2.6E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 802 | 848 | 1.67E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 784 | 853 | 9.4E-14 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 803 | 842 | 10.733671 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 193 | 249 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 53 | 79 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 172 | 249 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 305 | 338 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 39 | 79 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 305 | 322 | - | - |
| Coils | Coil | Coil | 91 | 111 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G04460.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010694518.1 | uncharacterized protein LOC104907301 [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A803NAQ2 | RING-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology