Basic Information
Locus ID:
GOSA_00026943
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
f-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig381 | 425494 | 426972 | + | GOSA_00026943 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.71 | 40,906.52 Da | 34.23 | 86.47 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 27 | 64 | 3.7E-7 | IPR001810 |
| Pfam | PF08268 | F-box associated domain | 133 | 222 | 7.0E-6 | IPR013187 |
| SUPERFAMILY | SSF81383 | F-box domain | 27 | 79 | 1.31E-9 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 10 | 97 | 1.3E-5 | - |
| SMART | SM00256 | fbox_2 | 28 | 68 | 8.8E-7 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 22 | 72 | 10.451268 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_010681442.2 | F-box protein At1g30790 [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A803L7D3 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah026116 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g140770 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12802, Sbi_jg53088 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8786 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00026943 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl34072, Sgl34296, Sgl39698 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000001075, gene:ENSEOMG00000003759 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0015700, CQ.Regalona.r1.6BG0016560 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G23433 |