Basic Information
Locus ID:
GOSA_00026351
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Short Name:
UBP5
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig750 | 372371 | 394288 | + | GOSA_00026351 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.04 | 104,262.36 Da | 45.09 | 87.75 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 755 | 912 | 4.37695E-58 | - |
| Pfam | PF06337 | DUSP domain | 35 | 140 | 3.4E-23 | IPR006615 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 314 | 911 | 9.9E-87 | IPR001394 |
| SUPERFAMILY | SSF143791 | DUSP-like | 13 | 140 | 1.57E-25 | IPR035927 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 312 | 913 | 1.45E-106 | IPR038765 |
| Gene3D | G3DSA:3.30.2230.10 | - | 6 | 152 | 6.4E-35 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 298 | 535 | 4.4E-66 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 636 | 921 | 4.2E-55 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 153 | 239 | 1.1E-11 | - |
| SMART | SM00695 | dusp | 31 | 142 | 2.7E-26 | IPR006615 |
| ProSiteProfiles | PS51283 | DUSP domain profile. | 12 | 139 | 18.05372 | IPR006615 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 314 | 914 | 57.226833 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 315 | 330 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 856 | 873 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40930.1 | ubiquitin-specific protease 5. Encodes ubiquitin-specific protease with nuclear localization signals that is likely to be involved in ubiquitin-mediated protein degradation. | 0 |
| RefSeq | XP_021859139.1 | ubiquitin carboxyl-terminal hydrolase 5 [Spinacia oleracea] | 0 |
| O22207 | Ubiquitin carboxyl-terminal hydrolase 5 OS=Arabidopsis thaliana OX=3702 GN=UBP5 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9QI07 | Ubiquitin carboxyl-terminal hydrolase OS=Spinacia oleracea OX=3562 GN=SOVF_183250 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology