Basic Information
Locus ID:
GOSA_00026240
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
RNA polymerase II-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig384 | 228513 | 234776 | + | GOSA_00026240 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.74 | 57,635.39 Da | 39.85 | 72.34 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07762 | Protein of unknown function (DUF1618) | 126 | 220 | 3.8E-5 | IPR011676 |
| SUPERFAMILY | SSF48452 | TPR-like | 391 | 475 | 3.22E-7 | IPR011990 |
| SUPERFAMILY | SSF48452 | TPR-like | 299 | 404 | 2.78E-23 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 404 | 480 | 2.0E-10 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 294 | 395 | 5.0E-28 | IPR011990 |
| SMART | SM00028 | tpr_5 | 332 | 363 | 0.08 | IPR019734 |
| SMART | SM00028 | tpr_5 | 297 | 330 | 1.2 | IPR019734 |
| SMART | SM00028 | tpr_5 | 364 | 397 | 150.0 | IPR019734 |
| SMART | SM00028 | tpr_5 | 430 | 463 | 0.67 | IPR019734 |
| ProSiteProfiles | PS50005 | TPR repeat profile. | 297 | 330 | 9.4994 | IPR019734 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 478 | 500 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G56440.2 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_021762273.1 | uncharacterized protein LOC110727047 [Chenopodium quinoa] | 0 |
| Q5ZKQ3 | RNA polymerase II-associated protein 3 OS=Gallus gallus OX=9031 GN=RPAP3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803ML08 | TPR_REGION domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology