Basic Information
Locus ID:
GOSA_00026067
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig828 | 539147 | 550956 | - | GOSA_00026067 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.75 | 139,433.03 Da | 48.78 | 76.15 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 310 | 438 | 1.08116E-13 | - |
| CDD | cd12108 | Hr-like | 657 | 813 | 1.06128E-29 | - |
| CDD | cd16464 | RING-H2_Pirh2 | 1122 | 1165 | 3.59574E-16 | - |
| CDD | cd12108 | Hr-like | 51 | 177 | 1.15107E-32 | - |
| Pfam | PF14599 | Zinc-ribbon | 1170 | 1227 | 5.6E-24 | IPR039512 |
| Pfam | PF05495 | CHY zinc finger | 994 | 1069 | 1.1E-17 | IPR008913 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 653 | 814 | 4.3E-9 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 53 | 179 | 2.5E-12 | IPR012312 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 985 | 1050 | 2.48E-7 | IPR037274 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1060 | 1115 | 6.15E-15 | IPR037275 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1122 | 1168 | 3.83E-6 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 47 | 197 | 9.5E-34 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 313 | 456 | 1.8E-18 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 649 | 900 | 2.3E-27 | - |
| Gene3D | G3DSA:2.20.28.10 | - | 1194 | 1235 | 2.0E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1118 | 1166 | 2.7E-7 | IPR013083 |
| SMART | SM00184 | ring_2 | 1123 | 1164 | 1.2E-5 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 987 | 1056 | 25.975447 | IPR008913 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1123 | 1164 | 10.999225 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1059 | 1122 | 29.077511 | IPR017921 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 756 | 776 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_010681649.2 | zinc finger protein BRUTUS isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QUB5 | Zinc finger protein BRUTUS OS=Spinacia oleracea OX=3562 GN=SOVF_140190 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology