Basic Information
Locus ID:
GOSA_00025587
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
RING finger and CHY zinc finger domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig476 | 628271 | 633700 | + | GOSA_00025587 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.85 | 33,019.84 Da | 39.49 | 71.14 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13445 | RING-type zinc-finger | 193 | 229 | 6.7E-8 | IPR027370 |
| Pfam | PF14599 | Zinc-ribbon | 242 | 278 | 1.5E-14 | IPR039512 |
| Pfam | PF05495 | CHY zinc finger | 36 | 117 | 1.5E-18 | IPR008913 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 155 | 186 | 3.53E-7 | IPR037275 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 108 | 141 | 2.48E-7 | IPR037275 |
| SUPERFAMILY | SSF57850 | RING/U-box | 192 | 227 | 1.15E-6 | - |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 33 | 107 | 2.62E-16 | IPR037274 |
| Gene3D | G3DSA:2.20.28.10 | - | 245 | 282 | 2.7E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 186 | 240 | 3.6E-7 | IPR013083 |
| SMART | SM00184 | ring_2 | 193 | 272 | 1.1E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 193 | 237 | 9.89275 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 29 | 105 | 25.734354 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 107 | 192 | 28.939945 | IPR017921 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25560.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_034683680.1 | probable E3 ubiquitin-protein ligase RZFP34 [Vitis riparia] | 0 |
| Q5JL96 | Probable E3 ubiquitin-protein ligase RZFP34 OS=Oryza sativa subsp. japonica OX=39947 GN=RZFP34 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5B7AR75 | Putative RING finger and CHY zinc finger domain-containing protein 1 OS=Davidia involucrata OX=16924 GN=Din_028648 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology