Basic Information
Locus ID:
GOSA_00025113
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
f-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig201 | 488270 | 490535 | - | GOSA_00025113 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.01 | 35,380.55 Da | 37.43 | 87.30 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 273 | 313 | 2.1E-6 | IPR002893 |
| SUPERFAMILY | SSF81383 | F-box domain | 18 | 83 | 1.2E-7 | IPR036047 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 269 | 315 | 2.44E-9 | - |
| SUPERFAMILY | SSF81901 | HCP-like | 78 | 201 | 1.13E-11 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 7 | 95 | 7.2E-6 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 263 | 320 | 3.9E-9 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 111 | 210 | 4.5E-9 | IPR011990 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 271 | 313 | 10.850805 | IPR002893 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G50450.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_021847550.1 | F-box protein At1g67340-like [Spinacia oleracea] | 0 |
| Q9FK27 | F-box protein At5g50450 OS=Arabidopsis thaliana OX=3702 GN=At5g50450 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9AF49 | MYND-type domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology