Basic Information
Locus ID:
GOSA_00024236
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Short Name:
WDR3
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig558 | 688020 | 688674 | + | GOSA_00024236 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.10 | 8,968.94 Da | 22.49 | 86.15 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 10 | 64 | 2.82E-11 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 14 | 76 | 7.0E-10 | IPR015943 |
| SMART | SM00320 | WD40_4 | 3 | 42 | 0.0085 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 17 | 51 | 9.40565 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 29 | 43 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 59 | 78 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039024828.1 | WD repeat-containing protein 3-like [Hibiscus syriacus] | 0 |
| TrEMBL | A0A2Z2DQ62 | WD40 repeat-containing 3-like protein OS=Aegilops tauschii OX=37682 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00016741, GOSA_00024236 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G144800 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC1AG009760, gene_TRIDC2AG026810 ... |
| Poaceae | Triticum aestivum | 1 | TraesCS2A02G206900.2 |