Basic Information
Locus ID:
GOSA_00024097
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig847 | 216442 | 229432 | + | GOSA_00024097 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.32 | 73,850.70 Da | 50.36 | 65.61 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00201 | WW | 23 | 52 | 6.24655E-4 | IPR001202 |
| CDD | cd18787 | SF2_C_DEAD | 372 | 501 | 3.23919E-63 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 177 | 347 | 1.3E-48 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 384 | 492 | 7.7E-34 | IPR001650 |
| SUPERFAMILY | SSF51045 | WW domain | 14 | 52 | 1.22E-7 | IPR036020 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 225 | 508 | 2.43E-73 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 362 | 534 | 3.3E-59 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 129 | 361 | 7.1E-88 | IPR027417 |
| SMART | SM00487 | ultradead3 | 172 | 375 | 1.3E-62 | IPR014001 |
| SMART | SM00490 | helicmild6 | 412 | 492 | 3.9E-34 | IPR001650 |
| SMART | SM00456 | ww_5 | 21 | 54 | 5.4E-5 | IPR001202 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 153 | 181 | 10.552991 | IPR014014 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 20 | 54 | 10.915601 | IPR001202 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 387 | 531 | 25.885315 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 184 | 358 | 29.654217 | IPR014001 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 304 | 312 | - | IPR000629 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 26 | 52 | - | IPR001202 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 98 | 116 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 533 | 653 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 97 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 48 | 116 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 48 | 81 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01540.1 | DEAD box RNA helicase 1. RNA HELICASE DRH1 | 0 |
| RefSeq | XP_010694508.1 | ATP-dependent RNA helicase-like protein DB10 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| P46942 | ATP-dependent RNA helicase-like protein DB10 OS=Nicotiana sylvestris OX=4096 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803NBD2 | DEAD-box ATP-dependent RNA helicase 46 OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology