Basic Information
Locus ID:
GOSA_00023979
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
isoform X1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig772 | 663049 | 684065 | + | GOSA_00023979 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.94 | 164,664.64 Da | 45.37 | 79.67 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 770 | 1067 | 5.32674E-83 | - |
| CDD | cd18793 | SF2_C_SNF | 1340 | 1447 | 7.96751E-55 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 494 | 766 | 7.25189E-79 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 1339 | 1437 | 2.4E-16 | IPR001650 |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 1182 | 1218 | 1.6E-6 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 514 | 766 | 1.9E-49 | IPR000330 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 786 | 1145 | 2.0E-68 | IPR000330 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1180 | 1228 | 6.85E-9 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 772 | 1067 | 1.09E-39 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 480 | 768 | 3.22E-40 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1076 | 1494 | 1.06E-58 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1079 | 1175 | 2.6E-5 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1176 | 1277 | 8.5E-10 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 940 | 1068 | 2.9E-26 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 468 | 770 | 3.2E-45 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 771 | 923 | 1.1E-19 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 1316 | 1491 | 2.8E-57 | IPR027417 |
| SMART | SM00184 | ring_2 | 1182 | 1220 | 0.0061 | IPR001841 |
| SMART | SM00490 | helicmild6 | 1354 | 1437 | 5.2E-20 | IPR001650 |
| SMART | SM00487 | ultradead3 | 770 | 1046 | 8.2E-20 | IPR014001 |
| SMART | SM00487 | ultradead3 | 490 | 763 | 1.4E-24 | IPR014001 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 780 | 1029 | 13.583622 | IPR014001 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 509 | 758 | 13.583622 | IPR014001 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1182 | 1221 | 10.114045 | IPR001841 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1331 | 1490 | 15.722362 | IPR001650 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 1197 | 1206 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 654 | 687 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 83 | 104 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 649 | 694 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 920 | 965 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 925 | 958 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61140.3 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_010686579.2 | helicase-like transcription factor CHR28 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QNB3 | DNA helicase OS=Spinacia oleracea OX=3562 GN=SOVF_160060 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology